7BC3 | pdb_00007bc3

Native virion of Kashmir bee virus at acidic pH

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]Rhv_4e7bc3B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_4ECOD (1.6)
CRhv_4e7bc3C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_4ECOD (1.6)
B [auth A]CRPV_capside7bc3A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: CRPV_capsidECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
B [auth A]PF08762CRPV capsid protein like (CRPV_capsid)CRPV capsid protein likeThis is a family of capsid proteins found in positive stranded ssRNA viruses such as cricket paralysis virus (CRPV). It forms an all beta sheet structure [1]. Domain
A [auth D]PF11492Cricket paralysis virus, VP4 (Dicistro_VP4)Cricket paralysis virus, VP4- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth B]Structural polyprotein -
Structural polyprotein -
B [auth A]Structural polyprotein -
A [auth D]Structural polyprotein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth B]IPR014872Dicistrovirus, capsid-polyprotein, C-terminalDomain
D [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth B]IPR001676Picornavirus capsidDomain
D [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth B]IPR024343Capsid protein VP4, dicistrovirusDomain
IPR014872Dicistrovirus, capsid-polyprotein, C-terminalDomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR001676Picornavirus capsidDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR024343Capsid protein VP4, dicistrovirusDomain
B [auth A]IPR014872Dicistrovirus, capsid-polyprotein, C-terminalDomain
B [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth A]IPR001676Picornavirus capsidDomain
B [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth A]IPR024343Capsid protein VP4, dicistrovirusDomain
A [auth D]IPR014872Dicistrovirus, capsid-polyprotein, C-terminalDomain
A [auth D]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth D]IPR001676Picornavirus capsidDomain
A [auth D]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth D]IPR024343Capsid protein VP4, dicistrovirusDomain