Annotations: 7B9S

Structure of the mycobacterial ESX-5 Type VII Secretion System hexameric pore complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth T]	MIF	e7b9sT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
T [auth O]	MIF	e7b9sO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
O [auth J]	MIF	e7b9sJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
J [auth A]	MIF	e7b9sA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
E [auth B]	MIF	e7b9sB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
DA [auth 1]	MIF	e7b9s11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
W [auth V]	MIF	e7b9sV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
R [auth P]	MIF	e7b9sP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
M [auth K]	MIF	e7b9sK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
H [auth F]	MIF	e7b9sF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
C	MIF	e7b9sC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
BA [auth 2]	MIF	e7b9s21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], Y [auth T]	EccB5	-	-	cell periphery cellular anatomical structure plasma membrane membrane extracellular region
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	EccC5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding	-	cell periphery cellular anatomical structure plasma membrane membrane
AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], I [auth G], L [auth N], N [auth L], Q [auth S], S [auth Q], V [auth Z], X [auth W]	EccD5	-	-	cell periphery cellular anatomical structure plasma membrane membrane
A [auth E], F [auth H], K [auth M], P [auth R], U [auth Y], A [auth E], F [auth H], K [auth M], P [auth R], U [auth Y], Z [auth 4]	EccE5	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], Y [auth T]	IPR044857	Type VII secretion system EccB, repeat 1 domain	Homologous Superfamily
DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], Y [auth T]	IPR007795	Type VII secretion system EccB	Family
DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], DA [auth 1], E [auth B], J [auth A], O [auth J], T [auth O], Y [auth T]	IPR042485	Type VII secretion system EccB, repeat 3 domain	Homologous Superfamily
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	IPR002543	FtsK domain	Domain
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	IPR003593	AAA+ ATPase domain	Domain
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	IPR050206	FtsK/SpoIIIE/SftA cell division and DNA translocation	Family
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	IPR023837	EccCb-like, Actinobacteria	Family
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	IPR023836	EccCa-like, Actinobacteria	Family
BA [auth 2], C, H [auth F], M [auth K], R [auth P], BA [auth 2], C, H [auth F], M [auth K], R [auth P], W [auth V]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], I [auth G], L [auth N], N [auth L], Q [auth S], S [auth Q], V [auth Z], X [auth W]	IPR024962	YukD-like	Domain
AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], I [auth G], L [auth N], N [auth L], Q [auth S], S [auth Q], V [auth Z], X [auth W]	IPR044049	EccD-like transmembrane domain	Domain
AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], AA [auth 5], B [auth X], CA [auth 3], D, G [auth I], I [auth G], L [auth N], N [auth L], Q [auth S], S [auth Q], V [auth Z], X [auth W]	IPR006707	Type VII secretion system membrane protein EccD	Family
A [auth E], F [auth H], K [auth M], P [auth R], U [auth Y], A [auth E], F [auth H], K [auth M], P [auth R], U [auth Y], Z [auth 4]	IPR050051	Type VII secretion system protein EccE domain	Domain
A [auth E], F [auth H], K [auth M], P [auth R], U [auth Y], A [auth E], F [auth H], K [auth M], P [auth R], U [auth Y], Z [auth 4]	IPR021368	Type VII secretion system protein EccE	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth E], AA [auth 5], B [auth X], BA [auth 2], C A [auth E], AA [auth 5], B [auth X], BA [auth 2], C, CA [auth 3], D, DA [auth 1], E [auth B], F [auth H], G [auth I], H [auth F], I [auth G], J [auth A], K [auth M], L [auth N], M [auth K], N [auth L], O [auth J], P [auth R], Q [auth S], R [auth P], S [auth Q], T [auth O], U [auth Y], V [auth Z], W [auth V], X [auth W], Y [auth T], Z [auth 4]	OPM	Transmembrane	Alpha-helical polytopic	AAA-ATPase superfamily, transmembrane	Type VII (ESX) protein secretion system

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth E], AA [auth 5], B [auth X], BA [auth 2], C A [auth E], AA [auth 5], B [auth X], BA [auth 2], C, CA [auth 3], D, DA [auth 1], E [auth B], F [auth H], G [auth I], H [auth F], I [auth G], J [auth A], K [auth M], L [auth N], M [auth K], N [auth L], O [auth J], P [auth R], Q [auth S], R [auth P], S [auth Q], T [auth O], U [auth Y], V [auth Z], W [auth V], X [auth W], Y [auth T], Z [auth 4]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth E], AA [auth 5], B [auth X], BA [auth 2], C A [auth E], AA [auth 5], B [auth X], BA [auth 2], C, CA [auth 3], D, DA [auth 1], E [auth B], F [auth H], G [auth I], H [auth F], I [auth G], J [auth A], K [auth M], L [auth N], M [auth K], N [auth L], O [auth J], P [auth R], Q [auth S], R [auth P], S [auth Q], T [auth O], U [auth Y], V [auth Z], W [auth V], X [auth W], Y [auth T], Z [auth 4]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Type VII Secretion Systems	ESX-5 Type VII Secretion System hexameric pore complex

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.