7AVO | pdb_00007avo

Structure of marine actinobacteria clade rhodopsin (MacR) in orange form in P1211 space group

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyG protein-coupled receptor-like 8071328 3000473 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyG protein-coupled receptor-like 8071328 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARibosomal_L19e7avoA1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L19ECOD (develop294)
BRibosomal_L19e7avoB1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L19ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Bacteriorhodopsin- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B
OPMTransmembraneAlpha-helical polytopicRhodopsin-like receptors and pumpsMicrobial and algal rhodopsins

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B
PDBTMAnnotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
LYR Parent Component: LYS

RESID:  AA0120

PSI-MOD :  N6-retinylidene-L-lysine MOD:00129