7AVO | pdb_00007avo

Structure of marine actinobacteria clade rhodopsin (MacR) in orange form in P1211 space group

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyG protein-coupled receptor-like 8071328 3000473 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyG protein-coupled receptor-like 8071328 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BBac_rhodopsine7avoB1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)
ABac_rhodopsine7avoA1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Bacteriorhodopsin- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B
OPMTransmembraneAlpha-helical polytopicRhodopsin-like receptors and pumpsMicrobial and algal rhodopsins

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B
PDBTMAnnotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
LYR Parent Component: LYS

RESID:  AA0120

PSI-MOD :  N6-retinylidene-L-lysine MOD:00129