7ASN | pdb_00007asn

Staphylococcus aureus 50S after 30 minutes incubation a 37C


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth D]SCOP2B SuperfamilyTranslational proteins 8089152 3000811 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082423 3000334 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRibosomal protein L20 8094941 3000563 SCOP2B (2022-06-29)
PSCOP2B Superfamilyl21p-like 8094148 3002005 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082503 3000334 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyRibosomal protein L29 (L29p) 8094170 3000713 SCOP2B (2022-06-29)
Y [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins 8081583 3001320 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyRibosomal protein L13 8066059 3001134 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyRibosomal protein L4 8094174 3001146 SCOP2B (2022-06-29)
E [auth 3]SCOP2B SuperfamilyL35p-like 8083334 3000790 SCOP2B (2022-06-29)
C [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8099282 3001320 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyRibosomal protein L30p/L7e 8076281 3001378 SCOP2B (2022-06-29)
U [auth a]SCOP2B SuperfamilyRibosomal L27 protein-like 8075030 3000539 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8086046 3000210 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein L22 8076726 3001078 SCOP2B (2022-06-29)
L [auth G]SCOP2B Superfamily50S Ribosomal protein L14-like 8093892 3000433 SCOP2B (2022-06-29)
K [auth Y]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076041 3000884 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070555 3001045 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth 2]Ribosomal_L34e7asn21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
G [auth D]Ribosomal_L3e7asnD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
MRibosomal_L18pe7asnM1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
NRibosomal_L19e7asnN1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
ORibosomal_L20e7asnO1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
PRibosomal_L21pe7asnP1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
Sribosomal_L24_1e7asnS1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
VRibosomal_L28e7asnV1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
WRibosomal_L29e7asnW1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
Y [auth b]Ribosomal_L32pe7asnb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
I [auth H]Ribosomal_L13e7asnH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
H [auth E]Ribosomal_L4e7asnE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
FRibosomal_L2_1e7asnF2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
FRibosomal_L2_Ce7asnF1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
E [auth 3]Ribosomal_L35pe7asn31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
C [auth 1]Ribosomal_L33e7asn11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
XRibosomal_L30e7asnX1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
U [auth a]Ribosomal_L27e7asna1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
TRibosomal_L25pe7asnT1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
RRibosomal_L23_2e7asnR1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
QRibosomal_L22e7asnQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
L [auth G]Ribosomal_L14e7asnG1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
K [auth Y]Ribosomal_L16e7asnY1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
J [auth L]Ribosomal_L27Ae7asnL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
T2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25 Chain PCATH (utative)
J [auth L]3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
G [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
PF00467KOW motif (KOW)KOW motif- Family
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
I [auth H]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
E [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
C [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
L [auth G]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
K [auth Y]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
J [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
5S---
D [auth 2]50S ribosomal protein L34
G [auth D]50S ribosomal protein L3
50S ribosomal protein L18
50S ribosomal protein L19
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L24
50S ribosomal protein L28
50S ribosomal protein L29
Y [auth b]50S ribosomal protein L32
I [auth H]50S ribosomal protein L13
H [auth E]50S ribosomal protein L4
50S ribosomal protein L2
E [auth 3]50S ribosomal protein L35
C [auth 1]50S ribosomal protein L33
50S ribosomal protein L30
U [auth a]50S ribosomal protein L27
50S ribosomal protein L25
50S ribosomal protein L23
50S ribosomal protein L22
L [auth G]50S ribosomal protein L14
K [auth Y]50S ribosomal protein L16
J [auth L]50S ribosomal protein L15
23S---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
D [auth 2]IPR000271Large ribosomal subunit protein bL34Family
G [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
G [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth D]IPR000597Large ribosomal subunit protein uL3Family
IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
IPR050096Bacterial ribosomal protein bL28Family
IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
IPR026569Large ribosomal subunit protein bL28Family
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IPR050063Universal ribosomal protein uL29Family
IPR001854Large ribosomal subunit protein uL29Family
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Y [auth b]IPR002677Large ribosomal subunit protein bL32Family
Y [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth b]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
I [auth H]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth H]IPR005822Large ribosomal subunit protein uL13Family
I [auth H]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
I [auth H]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
H [auth E]IPR002136Large ribosomal subunit protein uL4Family
H [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
E [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
E [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
E [auth 3]IPR001706Large ribosomal subunit protein bL35Family
E [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
C [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
C [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
C [auth 1]IPR001705Large ribosomal subunit protein bL33Family
C [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
U [auth a]IPR001684Large ribosomal subunit protein bL27Family
U [auth a]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR001021Ribosomal protein bL25, long-formFamily
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
IPR020057Large ribosomal subunit protein bL25, beta domainDomain
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
L [auth G]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
L [auth G]IPR000218Large ribosomal subunit protein uL14Family
L [auth G]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
L [auth G]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
K [auth Y]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
K [auth Y]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
K [auth Y]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
K [auth Y]IPR016180Large ribosomal subunit protein uL16 domainDomain
K [auth Y]IPR047873Large ribosomal subunit protein uL16Family
J [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
J [auth L]IPR030878Large ribosomal subunit protein uL15Family
J [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
J [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
J [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily