43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth r] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8099470 | 3000100 | SCOP2B (2022-06-29) |
| H [auth p] | SCOP2B Superfamily | WD40 repeat-like | 8101627 | 3001694 | SCOP2B (2022-06-29) |
| VA [auth W] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8059222 | 3002166 | SCOP2B (2022-06-29) |
| OA [auth Q] | SCOP2 Family | Ribosomal protein S14p/S29e | 8102904 | 4003647 | SCOP2 (2022-06-29) |
| OA [auth Q] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8102905 | 3000068 | SCOP2 (2022-06-29) |
| JA [auth c] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8099466 | 3002190 | SCOP2B (2022-06-29) |
| IA [auth b] | SCOP2 Family | Ribosomal protein S8 | 8102906 | 4002027 | SCOP2 (2022-06-29) |
| IA [auth b] | SCOP2 Superfamily | Ribosomal protein S8 | 8102907 | 3000709 | SCOP2 (2022-06-29) |
| HA [auth O] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8099472 | 3000034 | SCOP2B (2022-06-29) |
| GA [auth N] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8099478 | 3000034 | SCOP2B (2022-06-29) |
| EA [auth L] | SCOP2B Superfamily | Ribosomal protein S10 | 8099462 | 3001336 | SCOP2B (2022-06-29) |
| AA [auth h] | SCOP2B Superfamily | L30e-like | 8099460 | 3001739 | SCOP2B (2022-06-29) |
| Y [auth a] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8099474 | 3000034 | SCOP2B (2022-06-29) |
| X [auth g] | SCOP2 Family | Ribosomal protein S21e | 8102792 | 4006215 | SCOP2 (2022-06-29) |
| X [auth g] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8102793 | 3000068 | SCOP2 (2022-06-29) |
| V [auth F] | SCOP2 Family | Ribosomal protein S2-like | 8102902 | 4003744 | SCOP2 (2022-06-29) |
| V [auth F] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8102903 | 3001397 | SCOP2 (2022-06-29) |
| S [auth v] | SCOP2B Superfamily | Translational machinery components | 8099464 | 3000571 | SCOP2B (2022-06-29) |
| R [auth U] | SCOP2 Family | Cold shock DNA-binding domain-like | 8102772 | 4001909 | SCOP2 (2022-06-29) |
| R [auth U] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8102773 | 3000135 | SCOP2 (2022-06-29) |
| Q [auth t] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8059226 | 3000068 | SCOP2B (2022-06-29) |
| M [auth o] | SCOP2B Superfamily | Ribosomal protein S7 | 8066023 | 3000799 | SCOP2B (2022-06-29) |
| J [auth u] | SCOP2B Superfamily | S13-like H2TH domain | 8101629 | 3000053 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth r] | JAB | e7aser1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| H [auth p] | JAB | e7asep1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| F [auth j] | JAB | e7asej1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| ZA [auth l] | XRCC4 | e7asel1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: XRCC4 | ECOD (develop294) |
| XA [auth H] | XRCC4 | e7aseH1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: XRCC4 | ECOD (develop294) |
| E [auth s] | JAB | e7ases1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| VA [auth W] | XRCC4 | e7aseW1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: XRCC4 | ECOD (develop294) |
| SA [auth T] | XRCC4 | e7aseT1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: XRCC4 | ECOD (develop294) |
| RA [auth K] | XRCC4 | e7aseK1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: XRCC4 | ECOD (develop294) |
| QA [auth G] | JAB | e7aseG1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| QA [auth G] | XRCC4 | e7aseG2 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: XRCC4 | ECOD (develop294) |
| PA [auth D] | JAB | e7aseD1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| OA [auth Q] | JAB | e7aseQ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| NA [auth Y] | JAB | e7aseY1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| D [auth y] | Ribosomal_S24e | e7asey1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Ribosomal_S24e | ECOD (develop294) |
| MA [auth E] | Glycos_transf_3 | e7aseE1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Glycos_transf_3 | ECOD (develop294) |
| KA [auth V] | JAB | e7aseV1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| JA [auth c] | JAB | e7asec1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| IA [auth b] | JAB | e7aseb1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| HA [auth O] | JAB | e7aseO1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| GA [auth N] | JAB | e7aseN1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| FA [auth M] | JAB | e7aseM1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| EA [auth L] | JAB | e7aseL1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| DA [auth i] | JAB | e7asei1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| CA [auth P] | JAB | e7aseP1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| BA [auth 5] | JAB | e7ase51 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| AA [auth h] | JAB | e7aseh1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| Z [auth J] | JAB | e7aseJ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| Y [auth a] | JAB | e7asea1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| X [auth g] | JAB | e7aseg1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| W [auth d] | JAB | e7ased1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| V [auth F] | JAB | e7aseF1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| U [auth B] | JAB | e7aseB1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| T [auth X] | JAB | e7aseX1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| S [auth v] | JAB | e7asev1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| R [auth U] | JAB | e7aseU1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| Q [auth t] | JAB | e7aset1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| P [auth S] | JAB | e7aseS1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| O [auth R] | JAB | e7aseR1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| N [auth q] | JAB | e7aseq1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| M [auth o] | JAB | e7aseo1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| L [auth Z] | JAB | e7aseZ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| K [auth m] | JAB | e7asem1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
| J [auth u] | JAB | e7aseu1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: JAB | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| YA [auth A] | PF05091 | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (eIF-3_zeta) | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | - | Family |
| XA [auth H] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| TA [auth C] | PF05470 | Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N) | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | - | Repeat |
| SA [auth T] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
| SA [auth T] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| RA [auth K] | PF10075 | CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K) | CSN8/PSMD8/EIF3K family | - | Family |
| OA [auth Q] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| OA [auth Q] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| NA [auth Y] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| MA [auth E] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
| KA [auth V] | PF01253 | Translation initiation factor SUI1 (SUI1) | Translation initiation factor SUI1 | Domain | |
| KA [auth V] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| HA [auth O] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| HA [auth O] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| FA [auth M] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| FA [auth M] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| FA [auth M] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| EA [auth L] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| CA [auth P] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| CA [auth P] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| BA [auth 5] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| BA [auth 5] | PF09173 | Initiation factor eIF2 gamma, C terminal (eIF2_C) | Initiation factor eIF2 gamma, C terminal | Members of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1]. | Domain |
| Z [auth J] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
| V [auth F] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| V [auth F] | PF23002 | ATP-dependent RNA helicase DDX60, PIN-like domain (PIN-like_DDX60) | ATP-dependent RNA helicase DDX60, PIN-like domain | This domain is found N-terminal in the homologues of ATP-dependent RNA helicase DDX60 (also known as DEAD-box RNA helicase). This helicase binds ssRNA, dsRNA and dsDNA and can promote the binding of RIGI to dsRNA. DDX60 is non-essential in mammals [1 ... | Domain |
| U [auth B] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| T [auth X] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| T [auth X] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| R [auth U] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| P [auth S] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| O [auth R] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| O [auth R] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| L [auth Z] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |














