7ARM | pdb_00007arm

LolCDE in complex with lipoprotein and LolA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth A]SCOP2B SuperfamilyLolA-like 8044572 3001964 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyABC transporter-like P-loop ATPases 8102887 3002020 SCOP2B (2022-06-29)
C [auth F]SCOP2B SuperfamilyABC transporter-like P-loop ATPases 8102887 3002020 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth A]LolAe7armA1 A: beta meandersX: Lipoprotein localization factors LolABH: Lipoprotein localization factors LolAB (From Topology)T: Lipoprotein localization factors LolABF: LolAECOD (1.6)
DABC_trane7armD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ABC_tranECOD (1.6)
C [auth F]ABC_trane7armF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ABC_tranECOD (1.6)
B [auth E]MacB_PCD_1e7armE2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: MacB_PCD_1ECOD (1.6)
B [auth E]lolCEe7armE1 A: alpha bundlesX: Type II ABC exporter transmembrane domain foldH: Type II ABC exporter transmembrane domain-relatedT: MacB transmembrane domainF: lolCEECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth A]PF03548Outer membrane lipoprotein carrier protein LolA (LolA)Outer membrane lipoprotein carrier protein LolADomain
C [auth F],
D
PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
B [auth E]PF12704MacB-like periplasmic core domain (MacB_PCD)MacB-like periplasmic core domainThis family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug eff ...This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Domain
B [auth E]PF02687FtsX-like permease C-terminal (FtsX)FtsX-like permease C-terminalThis entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing ...This entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing system transmembrane protein LolC (Swiss:P57382) which has been shown to transport lipids targeted to the outer membrane across the inner membrane [3]. This region contains three transmembrane helices.
Domain
A [auth C]PF12704MacB-like periplasmic core domain (MacB_PCD)MacB-like periplasmic core domainThis family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug eff ...This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Domain
A [auth C]PF02687FtsX-like permease C-terminal (FtsX)FtsX-like permease C-terminalThis entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing ...This entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing system transmembrane protein LolC (Swiss:P57382) which has been shown to transport lipids targeted to the outer membrane across the inner membrane [3]. This region contains three transmembrane helices.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth A]Outer-membrane lipoprotein carrier protein-
E [auth V]LPP
C [auth F],
D
Lipoprotein-releasing system ATP-binding protein LolD
B [auth E]Lipoprotein-releasing system transmembrane protein LolE
A [auth C]Lipoprotein-releasing ABC transporter permease subunit LolC

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth A]IPR018323Outer membrane lipoprotein carrier protein LolA, ProteobacteriaFamily
F [auth A]IPR004564Outer membrane lipoprotein carrier protein LolA-likeFamily
F [auth A]IPR029046Lipoprotein localisation LolA/LolB/LppXHomologous Superfamily
E [auth V]IPR016367Major outer membrane lipoprotein LppFamily
E [auth V]IPR006817Lipoprotein leucine-zipperDomain
C [auth F],
D
IPR011924Lipoprotein releasing system, ATP-binding proteinFamily
C [auth F],
D
IPR017871ABC transporter-like, conserved siteConserved Site
C [auth F],
D
IPR017911MacB-like, ATP-binding domainDomain
C [auth F],
D
IPR003439ABC transporter-like, ATP-binding domainDomain
C [auth F],
D
IPR003593AAA+ ATPase domainDomain
C [auth F],
D
IPR015854ABC transporter, lipoprotein release, LolD-likeFamily
C [auth F],
D
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth E]IPR051447Lipoprotein-releasing system transmembrane proteinFamily
B [auth E]IPR011926Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria typeFamily
B [auth E]IPR003838ABC3 transporter permease, C-terminalDomain
B [auth E]IPR025857MacB-like periplasmic core domainDomain
B [auth E]IPR011925Lipoprotein-releasing system transmembrane protein LolC/EFamily
A [auth C]IPR051447Lipoprotein-releasing system transmembrane proteinFamily
A [auth C]IPR003838ABC3 transporter permease, C-terminalDomain
A [auth C]IPR025857MacB-like periplasmic core domainDomain
A [auth C]IPR011925Lipoprotein-releasing system transmembrane protein LolC/EFamily