7AQC
Structure of the bacterial RQC complex (Decoding State)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Translational proteins | 8089142 | 3000811 | SCOP2B (2022-06-29) |
R [auth S] | SCOP2B Superfamily | Ribosomal protein L22 | 8076724 | 3001078 | SCOP2B (2022-06-29) |
J [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072020 | 3000433 | SCOP2B (2022-06-29) |
K [auth L] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070559 | 3001045 | SCOP2B (2022-06-29) |
L [auth M] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076039 | 3000884 | SCOP2B (2022-06-29) |
M [auth N] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089014 | 3000995 | SCOP2B (2022-06-29) |
P [auth Q] | SCOP2B Superfamily | Ribosomal protein L20 | 8075004 | 3000563 | SCOP2B (2022-06-29) |
T [auth U] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082505 | 3000334 | SCOP2B (2022-06-29) |
U [auth V] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8075028 | 3000539 | SCOP2B (2022-06-29) |
W [auth X] | SCOP2B Superfamily | L28p-like | 8089402 | 3001966 | SCOP2B (2022-06-29) |
Y [auth Z] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8076285 | 3001378 | SCOP2B (2022-06-29) |
Z [auth a] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082419 | 3000334 | SCOP2B (2022-06-29) |
AA [auth b] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081585 | 3001320 | SCOP2B (2022-06-29) |
BA [auth c] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8075070 | 3001320 | SCOP2B (2022-06-29) |
DA [auth e] | SCOP2B Superfamily | L35p-like | 8083342 | 3000790 | SCOP2B (2022-06-29) |
EA [auth f] | SCOP2B Superfamily | Ribosomal protein L36 | 8083304 | 3001346 | SCOP2B (2022-06-29) |
FA [auth g] | SCOP2B Superfamily | l21p-like | 8082437 | 3002005 | SCOP2B (2022-06-29) |
GA [auth h] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077095 | 3000210 | SCOP2B (2022-06-29) |
HA [auth i] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8076730 | 3000713 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein L4 | 8080694 | 3001146 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RL5-like | 8073858 | 3001709 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | Ribosomal protein L13 | 8066055 | 3001134 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | Ribosomal_L3 | e7aqcD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
R [auth S] | Ribosomal_L22 | e7aqcS1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
X [auth Y] | S4_1 | e7aqcY1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4_1 | ECOD (1.6) |
J [auth K] | Ribosomal_L14 | e7aqcK1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
K [auth L] | Ribosomal_L27A | e7aqcL1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
L [auth M] | Ribosomal_L16 | e7aqcM1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
M [auth N] | Ribosomal_L17_1 | e7aqcN1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
N [auth O] | Ribosomal_L18p | e7aqcO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
P [auth Q] | Ribosomal_L20 | e7aqcQ1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
T [auth U] | ribosomal_L24_1 | e7aqcU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
U [auth V] | Ribosomal_L27 | e7aqcV1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
W [auth X] | Ribosomal_L28 | e7aqcX1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
Y [auth Z] | Ribosomal_L30 | e7aqcZ1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
Z [auth a] | Ribosomal_L19 | e7aqca1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
AA [auth b] | Ribosomal_L32p | e7aqcb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
BA [auth c] | Ribosomal_L33 | e7aqcc1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
CA [auth d] | Ribosomal_L34 | e7aqcd1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
DA [auth e] | Ribosomal_L35p | e7aqce1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
C | Ribosomal_L2_1 | e7aqcC2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
C | Ribosomal_L2_C | e7aqcC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
EA [auth f] | Ribosomal_L36 | e7aqcf1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
FA [auth g] | Ribosomal_L21p | e7aqcg1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
GA [auth h] | Ribosomal_L23_2 | e7aqch1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
HA [auth i] | Ribosomal_L29 | e7aqci1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
E | Ribosomal_L4 | e7aqcE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
F | Ribosomal_L5_C | e7aqcF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
G | Ribosomal_L6 | e7aqcG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
G | Ribosomal_L6_1 | e7aqcG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
H [auth I] | Ribosomal_L11 | e7aqcI2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
H [auth I] | Ribosomal_L11_N | e7aqcI1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
I [auth J] | Ribosomal_L13 | e7aqcJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family | |
PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family | |
R [auth S] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
X [auth Y] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family | |
J [auth K] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
K [auth L] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
L [auth M] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
M [auth N] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
N [auth O] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
P [auth Q] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
Q [auth R] | PF05670 | NFACT protein RNA binding domain (NFACT-R_1) | NFACT protein RNA binding domain | This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Swiss:O34693 where the N-terminal region is involved in this activity [1]. It is an RNA binding domain of the ... | Domain |
Q [auth R] | PF05833 | NFACT N-terminal and middle domains (NFACT_N) | NFACT N-terminal and middle domains | - | Family |
T [auth U] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
T [auth U] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
W [auth X] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
Y [auth Z] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain | |
PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain | |
PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family | |
PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family | |
PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family | |
PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain | |
PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain | |
PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain | |
H [auth I] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
H [auth I] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
H [auth I] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
I [auth J] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |