7AOI | pdb_00007aoi

Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
NA [auth BQ]	SCOP2B Superfamily	Cyclophilin-like	8065077	3000168	SCOP2B (2022-06-29)
UA [auth BZ]	SCOP2 Family	Cyclophilin peptidylprolyl isomerase-like	8102007	4000390	SCOP2 (2022-06-29)
UA [auth BZ]	SCOP2 Superfamily	Cyclophilin-like	8102008	3000168	SCOP2 (2022-06-29)
PB [auth XD]	SCOP2B Superfamily	ACP-like	8095575	3001805	SCOP2B (2022-06-29)
QB [auth XE]	SCOP2B Superfamily	ACP-like	8095575	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth A1]	Ribosomal_L28_1	e7aoiA11	A: few secondary structure elements	X: Ribosomal protein bL28-related (From Homology)	H: Ribosomal protein bL28-related	T: Mitoribosomal protein bL28m	F: Ribosomal_L28_1	ECOD (1.6)
D [auth A5]	F_UNCLASSIFIED	e7aoiA51	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: F_UNCLASSIFIED	ECOD (1.6)
K [auth AN]	Ribosomal_L13	e7aoiAN1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: Ribosomal_L13	ECOD (1.6)
W [auth Al]	Img2	e7aoiAl1	A: a+b two layers	X: Glucose permease domain IIB-like	H: eIF1-like (From Topology)	T: eIF1-like	F: Img2	ECOD (1.6)
HA [auth BI]	PPR_long	e7aoiBI1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PPR_long	ECOD (1.6)
NA [auth BQ]	Pro_isomerase	e7aoiBQ1	A: beta barrels	X: Cyclophilin-like (From Topology)	H: Cyclophilin-like (From Topology)	T: Cyclophilin-like	F: Pro_isomerase	ECOD (1.6)
TA [auth BX]	F_UNCLASSIFIED	e7aoiBX1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
TA [auth BX]	LIM_C_1	e7aoiBX2	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_C_1	ECOD (1.6)
UA [auth BZ]	Pro_isomerase	e7aoiBZ1	A: beta barrels	X: Cyclophilin-like (From Topology)	H: Cyclophilin-like (From Topology)	T: Cyclophilin-like	F: Pro_isomerase	ECOD (1.6)
WA [auth Bb]	Rhodanese	e7aoiBb1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: Rhodanese/Cell cycle control phosphatase	F: Rhodanese	ECOD (1.6)
AB [auth Bh]	F_UNCLASSIFIED	e7aoiBh1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: F_UNCLASSIFIED	ECOD (1.6)
PB [auth XD]	PP-binding	e7aoiXD1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
QB [auth XE]	PP-binding	e7aoiXE1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
SB [auth XG]	Ribosomal_L14	e7aoiXG1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: Ribosomal_L14	ECOD (1.6)
WB [auth XL]	KH_dom-like	e7aoiXL3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Probable GTPase Der, C-terminal domain (From Topology)	T: Probable GTPase Der, C-terminal domain	F: KH_dom-like	ECOD (1.6)
WB [auth XL]	MnmE_helical_2nd	e7aoiXL2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)
XB [auth XM]	F_UNCLASSIFIED	e7aoiXM1	A: alpha bundles	X: LYR protein (From Topology)	H: LYR protein (From Topology)	T: LYR protein	F: F_UNCLASSIFIED	ECOD (1.6)
BC [auth XQ]	MnmE_helical_2nd	e7aoiXQ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A2]	PF06984	Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)	-	Family
G [auth AE]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
NA [auth BQ]	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].	Domain
PB [auth XD], QB [auth XE]	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain
AC [auth XP]	PF00849	RNA pseudouridylate synthase (PseudoU_synth_2)	RNA pseudouridylate synthase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth A1]	bL28m	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
B [auth A2]	uL29m	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast cell projection ciliary plasm cilium plasma membrane bounded cell projection protein-containing complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast cell projection ciliary plasm cilium plasma membrane bounded cell projection protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle organelle lumen ribonucleoprotein complex nucleus nuclear lumen
C [auth A3]	uL30m	-	-	-
D [auth A5]	bL32m	-	-	-
E [auth A8]	bL33m	-	-	-
F [auth AA]	mt-LSU rRNA	-	-	-
G [auth AE]	Ribosomal protein L3 mitochondrial, putative	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
H [auth AF]	Ribosomal protein L4/L1 family	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
I [auth AI]	RIBOSOMAL_L9 domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
J [auth AK]	Ribosomal protein L11,uL11m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
K [auth AN]	50S ribosomal protein L13	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
L [auth AP]	Ribosomal_L18e/L15P domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
M [auth AR]	50S ribosomal protein L17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
N [auth AT]	bL19m	-	-	-
O [auth AU]	bL20m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
P [auth AV]	Ribosomal protein L21	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
Q [auth AW]	Ribosomal protein L22p/L17e	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
R [auth AX]	Ribosomal protein L23	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
S [auth AY]	uL24m	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
T [auth Ae]	mL41	-	-	-
U [auth Af]	mL42	-	-	-
V [auth Ag]	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain containing protein	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
W [auth Al]	mL49	-	-	-
X [auth Ao]	mL52	-	-	-
Y [auth Ap]	mL53	-	-	-
Z [auth At]	mL63	-	-	-
AA [auth Av]	mL64,mL64	-	-	-
BA	mL67	-	-	-
CA [auth BB]	mL68,mL68,mL68	-	-	-
DA [auth BD]	mL70	-	-	-
EA [auth BE]	mL71	-	-	-
FA [auth BF]	Tetratricopeptide repeat	-	-	-
GA [auth BH]	mL74	-	-	-
HA [auth BI]	Mitochondrial RNA binding complex 1 subunit	-	-	-
IA [auth BJ]	mL76	-	-	-
JA [auth BK]	Chaperone protein DNAj, putative,mL77,Chaperone protein DNAj, putative	-	-	-
KA [auth BL]	mL78	-	-	-
LA [auth BN]	mL80	-	-	-
MA [auth BO]	mL81	-	-	-
NA [auth BQ]	Peptidyl-prolyl cis-trans isomerase	binding cyclosporin A binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen ribonucleoprotein complex nucleus nuclear lumen
OA [auth BR]	mL84	-	-	-
PA [auth BS]	mL85	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
QA [auth BT]	mL86	-	-	-
RA [auth BU]	mL87	-	-	-
SA [auth BW]	mL89	-	regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle organelle lumen ribonucleoprotein complex
TA [auth BX]	LIM domain containing protein,mL90	cation binding ion binding binding metal ion binding small molecule binding	-	-
UA [auth BZ]	Peptidyl-prolyl cis-trans isomerase	binding cyclosporin A binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection intracellular organelle nucleus intracellular membrane-bounded organelle
VA [auth Ba]	mL93	-	-	-
WA [auth Bb]	mL94	-	-	-
XA [auth Bc]	mL95	-	-	-
YA [auth Bf]	mL98	-	-	-
ZA [auth Bg]	mL99	-	-	-
AB [auth Bh]	mL100,mL100	-	-	-
BB [auth UA]	UNK1	-	-	-
CB [auth UB]	UNK2	-	-	-
DB [auth UC]	UNK3	-	-	-
EB [auth UD]	UNK4	-	-	-
FB [auth UE]	UNK5	-	-	-
GB [auth UF]	UNK6/mt-LAF15_2	-	-	-
HB [auth UG]	UNK7	-	-	-
IB [auth UH]	UNK8	-	-	-
JB [auth UI]	UNK9	-	-	-
KB [auth UJ]	UNK10	-	-	-
LB [auth UK]	UNK11	-	-	-
MB [auth XA]	mt-LAF7,mt-LAF7	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen
NB [auth XB]	DEAD-box helicase, putative,mt-LAF2	translation factor activity translation initiation factor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding translation factor activity translation initiation factor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity nucleic acid binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity	-	-
OB [auth XC]	mt-LAF4	RNA binding binding nucleic acid binding isomerase activity pseudouridine synthase activity catalytic activity intramolecular transferase activity	pseudouridine synthesis nucleobase-containing compound metabolic process RNA modification macromolecule modification RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
PB [auth XD], QB [auth XE]	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding acyl binding small molecule binding	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen
RB [auth XF]	mt-LAF15_1	-	-	-
SB [auth XG]	50S ribosomal protein L14	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
TB [auth XH]	mt-LAF8	-	-	-
UB [auth XI]	mt-LAF14	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
VB [auth XJ]	RNA uridylyltransferase	ribonucleoprotein complex binding protein-containing complex binding binding ribosomal large subunit binding ribosome binding	regulation of biological process ribonucleoprotein complex biogenesis regulation of cellular process biological regulation negative regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis cellular component biogenesis ribosome biogenesis negative regulation of cellular process negative regulation of ribosome biogenesis cellular process cellular component organization or biogenesis protein biosynthetic process regulation of biological process ribonucleoprotein complex biogenesis regulation of cellular process biological regulation negative regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis cellular component biogenesis ribosome biogenesis negative regulation of cellular process negative regulation of ribosome biogenesis cellular process cellular component organization or biogenesis protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	-
WB [auth XL]	GTP-binding protein, putative,mt-EngA	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	-
XB [auth XM]	Complex1-LYR-like	-	-	-
YB [auth XN]	mt-LAF12	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
ZB [auth XO]	SpoU rRNA Methylase family	RNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity methyltransferase activity catalytic activity RNA binding binding nucleic acid binding	methylation metabolic process cellular process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA processing methylation metabolic process cellular process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA processing macromolecule metabolic process	-
AC [auth XP]	Pseudouridylate synthase, putative	RNA binding binding nucleic acid binding isomerase activity pseudouridine synthase activity catalytic activity intramolecular transferase activity	RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process pseudouridine synthesis RNA modification macromolecule modification	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle organelle lumen ribonucleoprotein complex
BC [auth XQ]	GTP-binding protein	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
CC [auth XR]	Lipase (Class 3)	-	primary metabolic process metabolic process cellular process lipid metabolic process	-
DC [auth XS]	mL101	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
EC [auth XT]	mt-LAF19	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth A1]	IPR026569	Large ribosomal subunit protein bL28	Family
B [auth A2]	IPR038340	MRP-L47 superfamily, mitochondrial	Homologous Superfamily
B [auth A2]	IPR010729	Large ribosomal subunit protein uL29m, mitochondrial	Family
C [auth A3]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
G [auth AE]	IPR019927	Large ribosomal subunit protein uL3, bacteria/organella	Family
G [auth AE]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
G [auth AE]	IPR000597	Large ribosomal subunit protein uL3	Family
H [auth AF]	IPR013005	Large ribosomal subunit protein uL4-like	Family
H [auth AF]	IPR002136	Large ribosomal subunit protein uL4	Family
H [auth AF]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
I [auth AI]	IPR020070	Large ribosomal subunit protein bL9, N-terminal	Domain
I [auth AI]	IPR000244	Large ribosomal subunit protein bL9	Family
J [auth AK]	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
J [auth AK]	IPR000911	Ribosomal protein uL11	Family
J [auth AK]	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
J [auth AK]	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
J [auth AK]	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
K [auth AN]	IPR005822	Large ribosomal subunit protein uL13	Family
K [auth AN]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
L [auth AP]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
L [auth AP]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
L [auth AP]	IPR005749	Large ribosomal subunit protein uL15, bacteria	Family
M [auth AR]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
M [auth AR]	IPR000456	Large ribosomal subunit protein bL17	Family
O [auth AU]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
O [auth AU]	IPR005813	Large ribosomal subunit protein bL20	Family
P [auth AV]	IPR028909	Large ribosomal subunit protein bL21-like	Family
P [auth AV]	IPR001787	Large ribosomal subunit protein bL21	Family
P [auth AV]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
Q [auth AW]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
Q [auth AW]	IPR001063	Large ribosomal subunit protein uL22	Family
Q [auth AW]	IPR047867	Large ribosomal subunit protein uL22, bacteria/organella	Family
R [auth AX]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
R [auth AX]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
R [auth AX]	IPR013025	Large ribosomal subunit protein uL23-like	Family
S [auth AY]	IPR003256	Large ribosomal subunit protein uL24	Family
S [auth AY]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
S [auth AY]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
S [auth AY]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
V [auth Ag]	IPR007741	Ribosomal protein/NADH dehydrogenase domain	Domain
V [auth Ag]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
V [auth Ag]	IPR039927	Large ribosomal subunit protein mL43	Family
EA [auth BE]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
FA [auth BF]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
HA [auth BI]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
HA [auth BI]	IPR002885	Pentatricopeptide repeat	Repeat
JA [auth BK]	IPR001623	DnaJ domain	Domain
JA [auth BK]	IPR050817	DjlA DnaK co-chaperone	Family
JA [auth BK]	IPR036869	Chaperone J-domain superfamily	Homologous Superfamily
NA [auth BQ]	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
NA [auth BQ]	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
TA [auth BX]	IPR001781	Zinc finger, LIM-type	Domain
UA [auth BZ]	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
UA [auth BZ]	IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	Family
UA [auth BZ]	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
WA [auth Bb]	IPR036873	Rhodanese-like domain superfamily	Homologous Superfamily
NB [auth XB]	IPR001650	Helicase, C-terminal domain-like	Domain
NB [auth XB]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
NB [auth XB]	IPR014014	RNA helicase, DEAD-box type, Q motif	Domain
NB [auth XB]	IPR011545	DEAD/DEAH-box helicase domain	Domain
NB [auth XB]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
OB [auth XC]	IPR020103	Pseudouridine synthase, catalytic domain superfamily	Homologous Superfamily
OB [auth XC]	IPR042214	Pseudouridine synthase, TruD, catalytic domain	Homologous Superfamily
OB [auth XC]	IPR001656	Pseudouridine synthase, TruD	Family
PB [auth XD], QB [auth XE]	IPR006162	Phosphopantetheine attachment site	PTM
PB [auth XD], QB [auth XE]	IPR009081	Phosphopantetheine binding ACP domain	Domain
PB [auth XD], QB [auth XE]	IPR036736	ACP-like superfamily	Homologous Superfamily
PB [auth XD], QB [auth XE]	IPR003231	Acyl carrier protein	Family
RB [auth XF]	IPR059193	mt-LAF15-like	Family
SB [auth XG]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
SB [auth XG]	IPR000218	Large ribosomal subunit protein uL14	Family
VB [auth XJ]	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
VB [auth XJ]	IPR004394	Protein Iojap/ribosomal silencing factor RsfS	Family
WB [auth XL]	IPR005225	Small GTP-binding domain	Domain
WB [auth XL]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
WB [auth XL]	IPR032859	GTPase Der, C-terminal KH-domain-like	Domain
WB [auth XL]	IPR006073	GTP binding domain	Domain
WB [auth XL]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
ZB [auth XO]	IPR001537	tRNA/rRNA methyltransferase, SpoU type	Domain
ZB [auth XO]	IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	Homologous Superfamily
ZB [auth XO]	IPR051259	Ribosomal RNA Methyltransferase	Family
ZB [auth XO]	IPR029028	Alpha/beta knot methyltransferases	Homologous Superfamily
ZB [auth XO]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
AC [auth XP]	IPR020103	Pseudouridine synthase, catalytic domain superfamily	Homologous Superfamily
AC [auth XP]	IPR050188	RluA Pseudouridine Synthase	Family
AC [auth XP]	IPR006145	Pseudouridine synthase, RsuA/RluA-like	Domain
BC [auth XQ]	IPR006073	GTP binding domain	Domain
BC [auth XQ]	IPR023179	GTP-binding protein, orthogonal bundle domain superfamily	Homologous Superfamily
BC [auth XQ]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
CC [auth XR]	IPR002921	Fungal lipase-type domain	Domain
CC [auth XR]	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily