Nudaurelia capensis omega virus capsid: virus-like particles expressed in Nicotiana benthamiana
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth D] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8104323 | 3000918 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2 Family | Tetraviridae-like VP | 8104322 | 4000809 | SCOP2 (2022-06-29) |
| E [auth C] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8104323 | 3000918 | SCOP2 (2022-06-29) |
| C [auth B] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8104323 | 3000918 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8104323 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G [auth D] | Lys | e7anmD1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lys | ECOD (v294.1) |
| E [auth C] | Lyase_8_C | e7anmC1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Lyase_8_C | ECOD (v294.1) |
| C [auth B] | Lys | e7anmB1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lys | ECOD (v294.1) |
| A | Lys | e7anmA1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lys | ECOD (v294.1) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| B [auth aa], D [auth bb], F [auth cc], H [auth dd] | p70 | - | - | |
| A, C [auth B], E [auth C], G [auth D] | p70 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| B [auth aa], D [auth bb], F [auth cc], H [auth dd] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
| B [auth aa], D [auth bb], F [auth cc], H [auth dd] | IPR005313 | Peptidase N2 | Family |
| A, C [auth B], E [auth C], G [auth D] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
| A, C [auth B], E [auth C], G [auth D] | IPR005313 | Peptidase N2 | Family |
