7AE0 | pdb_00007ae0

Cryo-EM structure of an extracellular contractile injection system in marine bacterium Algoriphagus machipongonensis, the sheath-tube module in extended state.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth 4b]	UCR_UQCRX_QCR9	e7ae04b1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
Y [auth 4a]	UCR_UQCRX_QCR9	e7ae04a1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
X [auth 3f]	UCR_UQCRX_QCR9	e7ae03f1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
W [auth 3e]	UCR_UQCRX_QCR9	e7ae03e1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
V [auth 3d]	UCR_UQCRX_QCR9	e7ae03d1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
U [auth 3c]	UCR_UQCRX_QCR9	e7ae03c1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
T [auth 3b]	UCR_UQCRX_QCR9	e7ae03b1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
S [auth 3a]	UCR_UQCRX_QCR9	e7ae03a1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
JA [auth 5f]	UCR_UQCRX_QCR9	e7ae05f1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
IA [auth 5e]	UCR_UQCRX_QCR9	e7ae05e1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
HA [auth 5d]	UCR_UQCRX_QCR9	e7ae05d1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
GA [auth 5c]	UCR_UQCRX_QCR9	e7ae05c1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
FA [auth 5b]	UCR_UQCRX_QCR9	e7ae05b1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
EA [auth 5a]	UCR_UQCRX_QCR9	e7ae05a1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
DA [auth 4f]	UCR_UQCRX_QCR9	e7ae04f1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
CA [auth 4e]	UCR_UQCRX_QCR9	e7ae04e1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
BA [auth 4d]	UCR_UQCRX_QCR9	e7ae04d1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
AA [auth 4c]	UCR_UQCRX_QCR9	e7ae04c1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
R [auth 5F]	UCR_UQCRX_QCR9	e7ae05F1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
Q [auth 5E]	UCR_UQCRX_QCR9	e7ae05E1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
P [auth 5D]	UCR_UQCRX_QCR9	e7ae05D1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
O [auth 5C]	UCR_UQCRX_QCR9	e7ae05C1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
N [auth 5B]	UCR_UQCRX_QCR9	e7ae05B1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
M [auth 5A]	UCR_UQCRX_QCR9	e7ae05A1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
L [auth 4F]	UCR_UQCRX_QCR9	e7ae04F1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
K [auth 4E]	UCR_UQCRX_QCR9	e7ae04E1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
J [auth 4D]	UCR_UQCRX_QCR9	e7ae04D1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
I [auth 4C]	UCR_UQCRX_QCR9	e7ae04C1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
H [auth 4B]	UCR_UQCRX_QCR9	e7ae04B1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
G [auth 4A]	UCR_UQCRX_QCR9	e7ae04A1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
F [auth 3F]	UCR_UQCRX_QCR9	e7ae03F1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
E [auth 3E]	UCR_UQCRX_QCR9	e7ae03E1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
D [auth 3D]	UCR_UQCRX_QCR9	e7ae03D1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
C [auth 3C]	UCR_UQCRX_QCR9	e7ae03C1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
B [auth 3B]	UCR_UQCRX_QCR9	e7ae03B1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v295)
A [auth 3A]	GST_C	e7ae03A1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GST_C	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], F [auth 3F], G [auth 4A], H [auth 4B], I [auth 4C], J [auth 4D], K [auth 4E], L [auth 4F], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], F [auth 3F], G [auth 4A], H [auth 4B], I [auth 4C], J [auth 4D], K [auth 4E], L [auth 4F], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	PF06841	T4-like virus tail tube protein gp19 (Phage_T4_gp19)	T4-like virus tail tube protein gp19	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth 4c], BA [auth 4d], CA [auth 4e], DA [auth 4f], EA [auth 5a], AA [auth 4c], BA [auth 4d], CA [auth 4e], DA [auth 4f], EA [auth 5a], FA [auth 5b], GA [auth 5c], HA [auth 5d], IA [auth 5e], JA [auth 5f], S [auth 3a], T [auth 3b], U [auth 3c], V [auth 3d], W [auth 3e], X [auth 3f], Y [auth 4a], Z [auth 4b]	Phage tail protein	structural molecule activity	-	-
A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], F [auth 3F], G [auth 4A], H [auth 4B], I [auth 4C], J [auth 4D], K [auth 4E], L [auth 4F], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	Putative phage tail sheath protein FI	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth 4c], BA [auth 4d], CA [auth 4e], DA [auth 4f], EA [auth 5a], AA [auth 4c], BA [auth 4d], CA [auth 4e], DA [auth 4f], EA [auth 5a], FA [auth 5b], GA [auth 5c], HA [auth 5d], IA [auth 5e], JA [auth 5f], S [auth 3a], T [auth 3b], U [auth 3c], V [auth 3d], W [auth 3e], X [auth 3f], Y [auth 4a], Z [auth 4b]	IPR011747	Conserved hypothetical protein CHP02241	Family
AA [auth 4c], BA [auth 4d], CA [auth 4e], DA [auth 4f], EA [auth 5a], AA [auth 4c], BA [auth 4d], CA [auth 4e], DA [auth 4f], EA [auth 5a], FA [auth 5b], GA [auth 5c], HA [auth 5d], IA [auth 5e], JA [auth 5f], S [auth 3a], T [auth 3b], U [auth 3c], V [auth 3d], W [auth 3e], X [auth 3f], Y [auth 4a], Z [auth 4b]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family
A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], F [auth 3F], G [auth 4A], H [auth 4B], I [auth 4C], J [auth 4D], K [auth 4E], L [auth 4F], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	IPR052042	Tail sheath structural protein	Family
A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], A [auth 3A], B [auth 3B], C [auth 3C], D [auth 3D], E [auth 3E], F [auth 3F], G [auth 4A], H [auth 4B], I [auth 4C], J [auth 4D], K [auth 4E], L [auth 4F], M [auth 5A], N [auth 5B], O [auth 5C], P [auth 5D], Q [auth 5E], R [auth 5F]	IPR020287	Tail sheath protein, C-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.