6ZS9

Human mitochondrial ribosome in complex with ribosome recycling factor


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth 9]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like8053893 3002240 SCOP2B (2022-06-29)
L [auth A0]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8091481 3000334 SCOP2B (2022-06-29)
Q [auth A5]SCOP2B SuperfamilyRibosome recycling factor RRF8100392 3001524 SCOP2B (2022-06-29)
S [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063850 3001397 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8075050 3001320 SCOP2B (2022-06-29)
Z [auth AI]SCOP2B SuperfamilyTranslational machinery components8098948 3000571 SCOP2B (2022-06-29)
AA [auth AJ]SCOP2B SuperfamilyNucleic acid-binding proteins8095431 3000135 SCOP2B (2022-06-29)
BA [auth AK]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052599 3000068 SCOP2B (2022-06-29)
HA [auth AQ]SCOP2B SuperfamilyRibosomal protein S218053089 3002159 SCOP2B (2022-06-29)
IA [auth AR]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S22-like8051932 3002074 SCOP2B (2022-06-29)
PA [auth AY]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S31-like8090914 3002471 SCOP2B (2022-06-29)
UA [auth XF]SCOP2B SuperfamilyRibosomal protein L48080706 3001146 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L368083324 3001346 SCOP2B (2022-06-29)
YA [auth XK]SCOP2B SuperfamilyRibosomal protein L138100460 3001134 SCOP2B (2022-06-29)
ZA [auth XL]SCOP2B Superfamily50S Ribosomal protein L14-like8072072 3000433 SCOP2B (2022-06-29)
CB [auth XO]SCOP2B SuperfamilyProkaryotic ribosomal protein L178033689 3000995 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]PF01783e6zs901 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
J [auth 9]PF09809e6zs991 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: PF09809ECOD (1.6)
L [auth A0]PF16053e6zs9A01 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: PF16053ECOD (1.6)
M [auth A1]PF10213e6zs9A11 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF10213ECOD (1.6)
N [auth A2]PF06747e6zs9A21 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: PF06747ECOD (1.6)
O [auth A3]PF08213e6zs9A31 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: PF08213ECOD (1.6)
Q [auth A5]PF01765e6zs9A51 A: a+b two layersX: RRF/tRNA synthetase additional domain-likeH: Ribosome recycling factor, RRF (From Topology)T: Ribosome recycling factor, RRFF: PF01765ECOD (1.6)
S [auth AB]PF00318e6zs9AB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
B [auth 1]PF00471e6zs911 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
T [auth AC]PF14955e6zs9AC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF14955ECOD (1.6)
U [auth AD]PF03719e6zs9AD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
U [auth AD]PF00333e6zs9AD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
U [auth AD]PF21251e6zs9AD3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF21251ECOD (1.6)
V [auth AE]PF01250e6zs9AE1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
W [auth AF]PF00177e6zs9AF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
X [auth AG]PF00380e6zs9AG1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
Y [auth AH]PF00338e6zs9AH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
Z [auth AI]PF00411e6zs9AI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
AA [auth AJ]PF00164e6zs9AJ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
BA [auth AK]PF00253e6zs9AK1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
CA [auth AL]PF00312e6zs9AL1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
C [auth 2]PF00468e6zs921 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
DA [auth AM]PF00886e6zs9AM1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
EA [auth AN]PF00366e6zs9AN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
FA [auth AO]PF01084e6zs9AO1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
GA [auth AP]PF01084e6zs9AP1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
HA [auth AQ]PF01165e6zs9AQ1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
IA [auth AR]PF10245e6zs9AR1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: PF10245ECOD (1.6)
JA [auth AS]PF10484e6zs9AS1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: PF10484ECOD (1.6)
KA [auth AT]PF05047e6zs9AT1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
LA [auth AU]PF14943e6zs9AU1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: PF14943ECOD (1.6)
MA [auth AV]PF10037e6zs9AV1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF10037ECOD (1.6)
D [auth 3]PF01632e6zs931 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
NA [auth AW]PF10246e6zs9AW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF10246ECOD (1.6)
OA [auth AX]PF10236e6zs9AX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF10236ECOD (1.6)
PA [auth AY]PF15433e6zs9AY1 A: extended segmentsX: Mitoribosomal protein mS31 (From Topology)H: Mitoribosomal protein mS31 (From Topology)T: Mitoribosomal protein mS31F: PF15433ECOD (1.6)
QA [auth AZ]PF08293e6zs9AZ1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: PF08293ECOD (1.6)
SA [auth XD]PF00181e6zs9XD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
SA [auth XD]PF03947e6zs9XD1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
TA [auth XE]PF00297e6zs9XE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
UA [auth XF]PF00573e6zs9XF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
VA [auth XH]PF01281e6zs9XH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
E [auth 4]PF00444e6zs941 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
XA [auth XJ]PF00298e6zs9XJ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
XA [auth XJ]PF03946e6zs9XJ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
YA [auth XK]PF00572e6zs9XK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
ZA [auth XL]PF00238e6zs9XL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
AB [auth XM]PF00828e6zs9XM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
BB [auth XN]PF00252e6zs9XN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
CB [auth XO]PF01196e6zs9XO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
DB [auth XP]PF00861e6zs9XP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
EB [auth XQ]PF01245e6zs9XQ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
FB [auth XR]PF00453e6zs9XR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
GB [auth XS]PF00829e6zs9XS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
F [auth 5]PF07147e6zs951 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
HB [auth XT]PF00237e6zs9XT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
IB [auth XU]PF00276e6zs9XU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
JB [auth XV]PF00467,PF17136e6zs9XV1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
KB [auth XW]PF01016e6zs9XW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
LB [auth XX]PF00830e6zs9XX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
MB [auth XY]PF06984e6zs9XY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF06984ECOD (1.6)
NB [auth XZ]PF00327e6zs9XZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
OB [auth a]PF10210e6zs9a1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: PF10210ECOD (1.6)
PB [auth b]PF05047e6zs9b1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
QB [auth c]PF22935e6zs9c2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF22935ECOD (1.6)
QB [auth c]PF22892e6zs9c1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF22892ECOD (1.6)
G [auth 6]PF01161e6zs961 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PF01161ECOD (1.6)
RB [auth d]PF04280e6zs9d1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF04280ECOD (1.6)
SB [auth e]PF11788e6zs9e1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: PF11788ECOD (1.6)
TB [auth f]PF00338e6zs9f1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
UB [auth g]PF05046e6zs9g1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
VB [auth h]PF10501e6zs9h1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PF10501ECOD (1.6)
WB [auth i]PF10244e6zs9i1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: PF10244ECOD (1.6)
XB [auth j]PF18699e6zs9j1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: PF18699ECOD (1.6)
YB [auth k]PF10780e6zs9k1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF10780ECOD (1.6)
AC [auth m]PF09776e6zs9m1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF09776ECOD (1.6)
H [auth 7]PF02824e6zs972 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF02824ECOD (1.6)
H [auth 7]F_UNCLASSIFIEDe6zs971 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: F_UNCLASSIFIEDECOD (1.6)
BC [auth o]PF14978e6zs9o1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: PF14978ECOD (1.6)
CC [auth p]PF00472e6zs9p1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
EC [auth r]PF01084e6zs9r1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
FC [auth s]PF07147e6zs9s1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
JC [auth t4]PF16320e6zs9t41 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
GC [auth t1]PF16320e6zs9t11 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
HC [auth t2]PF16320e6zs9t21 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
IC [auth t3]PF16320e6zs9t31 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
KC [auth t5]PF16320e6zs9t51 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
LC [auth t6]PF16320e6zs9t61 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
I [auth 8]PF09812e6zs981 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: PF09812ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
J [auth 9]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
L [auth A0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family
M [auth A1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
N [auth A2]PF06747CHCH domain (CHCH)CHCH domainwe have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ...we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation [2]. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit [3]. The CHCH domain was previously called DUF657 [4].
Domain
O [auth A3]PF08213Mitochondrial mRNA-processing protein COX24, C-terminal (COX24_C)Mitochondrial mRNA-processing protein COX24, C-terminalThis domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is ...This domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is a component of the mitochondrial ribosome (mitoribosome), responsible for the synthesis of mitochondrial genome-encoded proteins, including at least some of the essential transmembrane subunits of the mitochondrial respiratory chain. The mitoribosomes are attached to the mitochondrial inner membrane and translation products are cotranslationally integrated into the membrane [2,3]. This domain is also found in COX24 mammalian homologue Aurora kinase A-interacting protein [4]. This entry also includes uncharacterised proteins from bacteria.
Domain
P [auth A4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
P [auth A4]PF13041PPR repeat family (PPR_2)PPR repeat family- Repeat
Q [auth A5]PF01765Ribosome recycling factor (RRF)Ribosome recycling factorThe ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ...The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Domain
S [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
B [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
T [auth AC]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
U [auth AD]PF2125140S ribosomal protein rpS2 (S5p), N-terminal (S5p_N)40S ribosomal protein rpS2 (S5p), N-terminalThis entry represents an extension found at the N-terminal of mammalian 28S ribosomal protein S5 [1,2]. This lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].Domain
U [auth AD]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
U [auth AD]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
V [auth AE]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
W [auth AF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
X [auth AG]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
Y [auth AH]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
Z [auth AI]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
AA [auth AJ]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
BA [auth AK]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
CA [auth AL]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
C [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DA [auth AM]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
EA [auth AN]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
FA [auth AO]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
GA [auth AP]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
HA [auth AQ]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
IA [auth AR]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
JA [auth AS]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
KA [auth AT]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
LA [auth AU]PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
MA [auth AV]PF10037Mitochondrial 28S ribosomal protein S27 (MRP-S27)Mitochondrial 28S ribosomal protein S27- Repeat
D [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
NA [auth AW]PF10246Mitochondrial ribosomal protein MRP-S35 (MRP-S35)Mitochondrial ribosomal protein MRP-S35- Family
OA [auth AX]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
PA [auth AY]PF15433Mitochondrial 28S ribosomal protein S31 (MRP-S31)Mitochondrial 28S ribosomal protein S31- Family
QA [auth AZ]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
SA [auth XD]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
SA [auth XD]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
TA [auth XE]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
UA [auth XF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
VA [auth XH]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
WA [auth XI]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
E [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
XA [auth XJ]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
XA [auth XJ]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
YA [auth XK]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
ZA [auth XL]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
AB [auth XM]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
BB [auth XN]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
CB [auth XO]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
DB [auth XP]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
EB [auth XQ]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
FB [auth XR]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
GB [auth XS]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
F [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
HB [auth XT]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
IB [auth XU]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
JB [auth XV]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
JB [auth XV]PF00467KOW motif (KOW)KOW motif- Family
KB [auth XW]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
LB [auth XX]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
MB [auth XY]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
NB [auth XZ]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
OB [auth a]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
PB [auth b]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
G [auth 6]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
RB [auth d]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
SB [auth e]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
TB [auth f]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
UB [auth g]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
VB [auth h]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
WB [auth i]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
XB [auth j]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
YB [auth k]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
ZB [auth l]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
AC [auth m]PF09776Mitochondrial ribosomal protein L55 (Mitoc_L55)Mitochondrial ribosomal protein L55- Family
BC [auth o]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
DC [auth q]PF10147Growth arrest and DNA-damage-inducible proteins-interacting protein 1 (CR6_interact)Growth arrest and DNA-damage-inducible proteins-interacting protein 1- Family
EC [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
FC [auth s]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
I [auth 8]PF09812Mitochondrial ribosomal protein L28 (MRP-L28)Mitochondrial ribosomal protein L28- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]39S ribosomal protein L32, mitochondrial
J [auth 9]39S ribosomal protein L41, mitochondrial
K [auth XA]16S rRNA---
L [auth A0]28S ribosomal protein S34, mitochondrial
M [auth A1]28S ribosomal protein S35, mitochondrial
N [auth A2]Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
O [auth A3]Aurora kinase A-interacting protein-
P [auth A4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Q [auth A5]Ribosome-recycling factor, mitochondrial
R [auth AA]12S rRNA---
S [auth AB]28S ribosomal protein S2, mitochondrial
B [auth 1]39S ribosomal protein L33, mitochondrial
T [auth AC]28S ribosomal protein S24, mitochondrial
U [auth AD]28S ribosomal protein S5, mitochondrial
V [auth AE]28S ribosomal protein S6, mitochondrial
W [auth AF]28S ribosomal protein S7, mitochondrial
X [auth AG]28S ribosomal protein S9, mitochondrial
Y [auth AH]28S ribosomal protein S10, mitochondrial-
Z [auth AI]28S ribosomal protein S11, mitochondrial
AA [auth AJ]28S ribosomal protein S12, mitochondrial
BA [auth AK]28S ribosomal protein S14, mitochondrial
CA [auth AL]28S ribosomal protein S15, mitochondrial
C [auth 2]39S ribosomal protein L34, mitochondrial
DA [auth AM]28S ribosomal protein S16, mitochondrial
EA [auth AN]28S ribosomal protein S17, mitochondrial
FA [auth AO]28S ribosomal protein S18b, mitochondrial
GA [auth AP]28S ribosomal protein S18c, mitochondrial
HA [auth AQ]28S ribosomal protein S21, mitochondrial
IA [auth AR]28S ribosomal protein S22, mitochondrial
JA [auth AS]28S ribosomal protein S23, mitochondrial
KA [auth AT]28S ribosomal protein S25, mitochondrial
LA [auth AU]28S ribosomal protein S26, mitochondrial
MA [auth AV]28S ribosomal protein S27, mitochondrial
D [auth 3]39S ribosomal protein L35, mitochondrial
NA [auth AW]28S ribosomal protein S28, mitochondrial
OA [auth AX]28S ribosomal protein S29, mitochondrial
PA [auth AY]28S ribosomal protein S31, mitochondrial
QA [auth AZ]28S ribosomal protein S33, mitochondrial
RA [auth XB]mt-tRNAVal---
SA [auth XD]39S ribosomal protein L2, mitochondrial
TA [auth XE]39S ribosomal protein L3, mitochondrial
UA [auth XF]39S ribosomal protein L4, mitochondrial
VA [auth XH]39S ribosomal protein L9, mitochondrial
WA [auth XI]39S ribosomal protein L10, mitochondrial
E [auth 4]39S ribosomal protein L36, mitochondrial
XA [auth XJ]39S ribosomal protein L11, mitochondrial
YA [auth XK]39S ribosomal protein L13, mitochondrial
ZA [auth XL]39S ribosomal protein L14, mitochondrial
AB [auth XM]39S ribosomal protein L15, mitochondrial
BB [auth XN]39S ribosomal protein L16, mitochondrial
CB [auth XO]39S ribosomal protein L17, mitochondrial
DB [auth XP]Mitochondrial ribosomal protein L18, isoform CRA_b
EB [auth XQ]39S ribosomal protein L19, mitochondrial
FB [auth XR]39S ribosomal protein L20, mitochondrial
GB [auth XS]39S ribosomal protein L21, mitochondrial
F [auth 5]39S ribosomal protein L37, mitochondrial
HB [auth XT]39S ribosomal protein L22, mitochondrial
IB [auth XU]39S ribosomal protein L23, mitochondrial
JB [auth XV]39S ribosomal protein L24, mitochondrial
KB [auth XW]39S ribosomal protein L27, mitochondrial
LB [auth XX]39S ribosomal protein L28, mitochondrial
MB [auth XY]39S ribosomal protein L47, mitochondrial
NB [auth XZ]39S ribosomal protein L30, mitochondrial
OB [auth a]39S ribosomal protein L42, mitochondrial
PB [auth b]39S ribosomal protein L43, mitochondrial
QB [auth c]39S ribosomal protein L44, mitochondrial
G [auth 6]39S ribosomal protein L38, mitochondrial-
RB [auth d]39S ribosomal protein L45, mitochondrial
SB [auth e]39S ribosomal protein L46, mitochondrial
TB [auth f]39S ribosomal protein L48, mitochondrial-
UB [auth g]39S ribosomal protein L49, mitochondrial
VB [auth h]39S ribosomal protein L50, mitochondrial-
WB [auth i]39S ribosomal protein L51, mitochondrial
XB [auth j]cDNA FLJ76418, highly similar to Homo sapiens mitochondrial ribosomal protein L52 (MRPL52), transcript variant 1, mRNA
YB [auth k]39S ribosomal protein L53, mitochondrial-
ZB [auth l]39S ribosomal protein L54, mitochondrial
AC [auth m]39S ribosomal protein L55, mitochondrial
H [auth 7]39S ribosomal protein L39, mitochondrial
BC [auth o]Ribosomal protein 63, mitochondrial
CC [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
DC [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1-
EC [auth r]39S ribosomal protein S18a, mitochondrial
FC [auth s]39S ribosomal protein S30, mitochondrial
39S ribosomal protein L12, mitochondrial
MC [auth A]Quinupristin---
I [auth 8]39S ribosomal protein L40, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
J [auth 9]IPR019189Large ribosomal subunit protein mL41Family
L [auth A0]IPR032053Small ribosomal subunit protein mS34Family
M [auth A1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
M [auth A1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
N [auth A2]IPR010625CHCHDomain
N [auth A2]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
N [auth A2]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
O [auth A3]IPR013177Ribosomal protein mS38, C-terminalDomain
P [auth A4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
P [auth A4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
P [auth A4]IPR002885Pentatricopeptide repeatRepeat
Q [auth A5]IPR023584Ribosome recycling factor domainDomain
Q [auth A5]IPR036191RRF superfamilyHomologous Superfamily
Q [auth A5]IPR002661Ribosome recycling factorFamily
S [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
S [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
S [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
S [auth AB]IPR001865Small ribosomal subunit protein uS2Family
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
T [auth AC]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
U [auth AD]IPR000851Small ribosomal subunit protein uS5Family
U [auth AD]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
U [auth AD]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
U [auth AD]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
U [auth AD]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
U [auth AD]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
U [auth AD]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
V [auth AE]IPR000529Small ribosomal subunit protein bS6Family
V [auth AE]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
V [auth AE]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
W [auth AF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
W [auth AF]IPR000235Small ribosomal subunit protein uS7Family
W [auth AF]IPR023798Small ribosomal subunit protein uS7 domainDomain
X [auth AG]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
X [auth AG]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
X [auth AG]IPR000754Small ribosomal subunit protein uS9Family
X [auth AG]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Y [auth AH]IPR027486Small ribosomal subunit protein uS10 domainDomain
Y [auth AH]IPR040055Small ribosomal subunit protein uS10mFamily
Y [auth AH]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
Z [auth AI]IPR001971Small ribosomal subunit protein uS11Family
Z [auth AI]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Z [auth AI]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
AA [auth AJ]IPR006032Small ribosomal subunit protein uS12Family
AA [auth AJ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth AJ]IPR005679Ribosomal protein uS12, bacterial-typeFamily
BA [auth AK]IPR001209Small ribosomal subunit protein uS14Family
CA [auth AL]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
CA [auth AL]IPR000589Small ribosomal subunit protein uS15Family
CA [auth AL]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
DA [auth AM]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
DA [auth AM]IPR000307Small ribosomal subunit protein bS16Family
EA [auth AN]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
EA [auth AN]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth AN]IPR000266Small ribosomal subunit protein uS17Family
FA [auth AO]IPR040054Small ribosomal subunit protein mS40Family
FA [auth AO]IPR001648Small ribosomal subunit protein bS18Family
FA [auth AO]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
GA [auth AP]IPR001648Small ribosomal subunit protein bS18Family
GA [auth AP]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
GA [auth AP]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
HA [auth AQ]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
HA [auth AQ]IPR001911Small ribosomal subunit protein bS21Family
IA [auth AR]IPR019374Small ribosomal subunit protein mS22Family
JA [auth AS]IPR023611Small ribosomal subunit protein mS23, conserved domainDomain
JA [auth AS]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
KA [auth AT]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
KA [auth AT]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
KA [auth AT]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
LA [auth AU]IPR026140Small ribosomal subunit protein mS26Family
MA [auth AV]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth AV]IPR002885Pentatricopeptide repeatRepeat
MA [auth AV]IPR019266Small ribosomal subunit protein mS27Family
MA [auth AV]IPR034913mS27/PTCD2Family
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
NA [auth AW]IPR019375Small ribosomal subunit protein bS1mFamily
OA [auth AX]IPR008092Small ribosomal subunit protein mS29, metazoan-typeFamily
OA [auth AX]IPR019368Small ribosomal subunit protein mS29Family
OA [auth AX]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth AY]IPR026299Mitochondrial 28S ribosomal protein S31Family
QA [auth AZ]IPR013219Small ribosomal subunit protein mS33Family
SA [auth XD]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
SA [auth XD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth XD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth XD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SA [auth XD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
SA [auth XD]IPR002171Large ribosomal subunit protein uL2Family
TA [auth XE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
TA [auth XE]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
TA [auth XE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
TA [auth XE]IPR000597Large ribosomal subunit protein uL3Family
UA [auth XF]IPR013005Large ribosomal subunit protein uL4-likeFamily
UA [auth XF]IPR002136Large ribosomal subunit protein uL4Family
UA [auth XF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
VA [auth XH]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
VA [auth XH]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
VA [auth XH]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
VA [auth XH]IPR000244Large ribosomal subunit protein bL9Family
WA [auth XI]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
WA [auth XI]IPR001790Large ribosomal subunit protein uL10Family
WA [auth XI]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
XA [auth XJ]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
XA [auth XJ]IPR000911Ribosomal protein uL11Family
XA [auth XJ]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
XA [auth XJ]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
XA [auth XJ]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
XA [auth XJ]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
YA [auth XK]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
YA [auth XK]IPR005822Large ribosomal subunit protein uL13Family
YA [auth XK]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
YA [auth XK]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
ZA [auth XL]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
ZA [auth XL]IPR000218Large ribosomal subunit protein uL14Family
AB [auth XM]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
AB [auth XM]IPR021131Large ribosomal subunit protein uL15/eL18Domain
AB [auth XM]IPR030878Large ribosomal subunit protein uL15Family
AB [auth XM]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
BB [auth XN]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
BB [auth XN]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
BB [auth XN]IPR016180Large ribosomal subunit protein uL16 domainDomain
BB [auth XN]IPR047873Large ribosomal subunit protein uL16Family
CB [auth XO]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
CB [auth XO]IPR000456Large ribosomal subunit protein bL17Family
DB [auth XP]IPR005484Large ribosomal subunit protein uL18Family
DB [auth XP]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
EB [auth XQ]IPR001857Large ribosomal subunit protein bL19Family
EB [auth XQ]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
EB [auth XQ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FB [auth XR]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
FB [auth XR]IPR005813Large ribosomal subunit protein bL20Family
GB [auth XS]IPR028909Large ribosomal subunit protein bL21-likeFamily
GB [auth XS]IPR001787Large ribosomal subunit protein bL21Family
GB [auth XS]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
F [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
HB [auth XT]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
HB [auth XT]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
HB [auth XT]IPR001063Large ribosomal subunit protein uL22Family
IB [auth XU]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IB [auth XU]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IB [auth XU]IPR013025Large ribosomal subunit protein uL23-likeFamily
JB [auth XV]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
JB [auth XV]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JB [auth XV]IPR003256Large ribosomal subunit protein uL24Family
JB [auth XV]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
JB [auth XV]IPR005824KOWDomain
JB [auth XV]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
KB [auth XW]IPR001684Large ribosomal subunit protein bL27Family
LB [auth XX]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
LB [auth XX]IPR026569Large ribosomal subunit protein bL28Family
LB [auth XX]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
MB [auth XY]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
MB [auth XY]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
NB [auth XZ]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
NB [auth XZ]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
NB [auth XZ]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
OB [auth a]IPR019346Large ribosomal subunit protein mL42Family
PB [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
PB [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
PB [auth b]IPR039927Large ribosomal subunit protein mL43Family
QB [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
QB [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
QB [auth c]IPR014720Double-stranded RNA-binding domainDomain
G [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
G [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
G [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
RB [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
RB [auth d]IPR007379Tim44-like domainDomain
SB [auth e]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
SB [auth e]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
SB [auth e]IPR040008Large ribosomal subunit protein mL46Family
SB [auth e]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
TB [auth f]IPR027486Small ribosomal subunit protein uS10 domainDomain
TB [auth f]IPR027487Large ribosomal subunit protein mL48Family
TB [auth f]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
UB [auth g]IPR007740Large ribosomal subunit protein mL49Family
VB [auth h]IPR018305Large ribosomal subunit protein mL50Family
WB [auth i]IPR019373Large ribosomal subunit protein mL51Family
XB [auth j]IPR034596Large ribosomal subunit protein mL52Family
YB [auth k]IPR019716Large ribosomal subunit protein mL53Family
ZB [auth l]IPR013870Large ribosomal subunit protein mL54Family
AC [auth m]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
AC [auth m]IPR018615Large ribosomal subunit protein mL55Family
H [auth 7]IPR012676TGS-likeHomologous Superfamily
H [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
H [auth 7]IPR004095TGSDomain
H [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
BC [auth o]IPR016576Large ribosomal subunit protein mL63Family
CC [auth p]IPR000352Peptide chain release factor class IDomain
DC [auth q]IPR018472Large ribosomal subunit protein mL64Family
DC [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
EC [auth r]IPR001648Small ribosomal subunit protein bS18Family
EC [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
FC [auth s]IPR039982Large ribosomal subunit protein mL65Family
FC [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
I [auth 8]IPR019192Large ribosomal subunit protein mL40Family
I [auth 8]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 0]PharosQ9BYC8
J [auth 9]PharosQ8IXM3
L [auth A0]PharosP82930
M [auth A1]PharosP82673
N [auth A2]PharosQ96BP2
O [auth A3]PharosQ9NWT8
P [auth A4]PharosQ96EY7
Q [auth A5]PharosQ96E11
S [auth AB]PharosQ9Y399
B [auth 1]PharosO75394
U [auth AD]PharosP82675
V [auth AE]PharosP82932
W [auth AF]PharosQ9Y2R9
X [auth AG]PharosP82933
Y [auth AH]PharosP82664
Z [auth AI]PharosP82912
AA [auth AJ]PharosO15235
BA [auth AK]PharosO60783
CA [auth AL]PharosP82914
C [auth 2]PharosQ9BQ48
DA [auth AM]PharosQ9Y3D3
EA [auth AN]PharosQ9Y2R5
FA [auth AO]PharosQ9Y676
GA [auth AP]PharosQ9Y3D5
HA [auth AQ]PharosP82921
IA [auth AR]PharosP82650
JA [auth AS]PharosQ9Y3D9
KA [auth AT]PharosP82663
MA [auth AV]PharosQ92552
D [auth 3]PharosQ9NZE8
NA [auth AW]PharosQ9Y2Q9
OA [auth AX]PharosP51398
PA [auth AY]PharosQ92665
QA [auth AZ]PharosQ9Y291
SA [auth XD]PharosQ5T653
TA [auth XE]PharosP09001
UA [auth XF]PharosQ9BYD3
VA [auth XH]PharosQ9BYD2
WA [auth XI]PharosQ7Z7H8
E [auth 4]PharosQ9P0J6
XA [auth XJ]PharosQ9Y3B7
YA [auth XK]PharosQ9BYD1
ZA [auth XL]PharosQ6P1L8
AB [auth XM]PharosQ9P015
BB [auth XN]PharosQ9NX20
CB [auth XO]PharosQ9NRX2
EB [auth XQ]PharosP49406
FB [auth XR]PharosQ9BYC9
F [auth 5]PharosQ9BZE1
IB [auth XU]PharosQ16540
JB [auth XV]PharosQ96A35
KB [auth XW]PharosQ9P0M9
LB [auth XX]PharosQ13084
MB [auth XY]PharosQ9HD33
NB [auth XZ]PharosQ8TCC3
OB [auth a]PharosQ9Y6G3
PB [auth b]PharosQ8N983
QB [auth c]PharosQ9H9J2
RB [auth d]PharosQ9BRJ2
TB [auth f]PharosQ96GC5
UB [auth g]PharosQ13405
VB [auth h]PharosQ8N5N7
WB [auth i]PharosQ4U2R6
ZB [auth l]PharosQ6P161
AC [auth m]PharosQ7Z7F7
H [auth 7]PharosQ9NYK5
BC [auth o]PharosQ9BQC6
CC [auth p]PharosQ14197
DC [auth q]PharosQ8TAE8
EC [auth r]PharosQ9NVS2
FC [auth s]PharosQ9NP92
PharosP52815
I [auth 8]PharosQ9NQ50

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
MC [auth A]004
MC [auth A]DBB RESIDAA0112

PSI-MOD :  (2S,3S,2'R)-3-methyllanthionine MOD:00121
MC [auth A]MHT RESIDAA0112

MC [auth A]MHU Parent Component: PHE

RESIDAA0112

MC [auth A]MHV RESIDAA0112

MC [auth A]MHW RESIDAA0112