6ZQ4

Crystal structure of Chaetomium thermophilum Glycerol Kinase in complex with substrate in P1 space group

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6zq4b1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
B	d6zq4b3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
A	d6zq4a1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
A	d6zq4a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
C	d6zq4c1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
C	d6zq4c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
D	d6zq4d1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
D	d6zq4d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
E	d6zq4e1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
E	d6zq4e3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
F	d6zq4f1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
F	d6zq4f3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
G	d6zq4g1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
G	d6zq4g3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
H	d6zq4h1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	automated matches	automated matches	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)
H	d6zq4h3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermochaetoides thermophila DSM 1495 ) [TaxId: 759272 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF00370	e6zq4B2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
B	PF02782	e6zq4B1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
A	PF00370	e6zq4A2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
A	PF02782	e6zq4A1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
C	PF00370	e6zq4C2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
C	PF02782	e6zq4C1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
D	PF00370	e6zq4D1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
D	PF02782	e6zq4D2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
E	PF00370	e6zq4E1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
E	PF02782	e6zq4E2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
F	PF00370	e6zq4F2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
F	PF02782	e6zq4F1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
G	PF00370	e6zq4G2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
G	PF02782	e6zq4G1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)
H	PF00370	e6zq4H2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00370	ECOD (1.6)
H	PF02782	e6zq4H1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF02782	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00370	FGGY family of carbohydrate kinases, N-terminal domain (FGGY_N)	FGGY family of carbohydrate kinases, N-terminal domain	This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF02782	FGGY family of carbohydrate kinases, C-terminal domain (FGGY_C)	FGGY family of carbohydrate kinases, C-terminal domain	This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Glycerol kinase-like protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity glycerol kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process organic substance metabolic process glycerol-3-phosphate metabolic process organophosphate metabolic process carbohydrate derivative metabolic process alditol phosphate metabolic process carbohydrate metabolic process polyol metabolic process alcohol catabolic process phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process organic substance metabolic process glycerol-3-phosphate metabolic process organophosphate metabolic process carbohydrate derivative metabolic process alditol phosphate metabolic process carbohydrate metabolic process polyol metabolic process alcohol catabolic process catabolic process organic hydroxy compound metabolic process polyol catabolic process carbohydrate catabolic process primary metabolic process alcohol metabolic process alditol catabolic process glycerol metabolic process alditol metabolic process organic hydroxy compound catabolic process glycerol catabolic process small molecule metabolic process small molecule catabolic process organic substance catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018485	Carbohydrate kinase FGGY, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005999	Glycerol kinase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018483	Carbohydrate kinase, FGGY, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000577	Carbohydrate kinase, FGGY	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018484	Carbohydrate kinase FGGY, N-terminal	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.