6XIQ

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
JSCOP2 FamilyRibosomal protein L58096931 4001498 SCOP2 (2022-06-29)
JSCOP2 SuperfamilyRL5-like8096932 3001709 SCOP2 (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
BSCOP2 FamilyRibosomal protein L38096941 4002103 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyTranslational proteins8096942 3000811 SCOP2 (2022-06-29)
T [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
U [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyWinged helix DNA-binding domain8055713 3000034 SCOP2B (2022-06-29)
AA [auth AB]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
AA [auth AB]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
GA [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
HA [auth b]SCOP2 FamilyRibosomal protein L29e8096929 4006531 SCOP2 (2022-06-29)
HA [auth b]SCOP2 SuperfamilyRibosomal protein L29e8096930 3002157 SCOP2 (2022-06-29)
IA [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyRibosomal protein L32e8102036 3000982 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTranslational machinery components8096938 3000571 SCOP2B (2022-06-29)
OA [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
PA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
QA [auth k]SCOP2 FamilyRibosomal L38e protein-like8096923 4006532 SCOP2 (2022-06-29)
QA [auth k]SCOP2 SuperfamilyRibosomal L38e protein-like8096924 3002206 SCOP2 (2022-06-29)
RA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
VA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
XA [auth q]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
YA [auth r]SCOP2 FamilyRibosomal S3Ae8101308 4006095 SCOP2 (2022-06-29)
YA [auth r]SCOP2 SuperfamilyRibosomal S3Ae-like8101309 3002166 SCOP2 (2022-06-29)
BB [auth u]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
BB [auth u]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
BB [auth u]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
CB [auth v]SCOP2B SuperfamilyRibosomal protein S78065999 3000799 SCOP2B (2022-06-29)
DB [auth w]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
HB [auth AD]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
HB [auth AD]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
IB [auth AE]SCOP2B SuperfamilyTranslational machinery components8098660 3000571 SCOP2B (2022-06-29)
KB [auth AG]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
MB [auth AI]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)
OB [auth AK]SCOP2B SuperfamilyRibosomal protein S108096928 3001336 SCOP2B (2022-06-29)
PB [auth AL]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
QB [auth AM]SCOP2 FamilyRibosomal protein S88101310 4002027 SCOP2 (2022-06-29)
QB [auth AM]SCOP2 SuperfamilyRibosomal protein S88101311 3000709 SCOP2 (2022-06-29)
TB [auth AP]SCOP2B SuperfamilyWinged helix DNA-binding domain8096934 3000034 SCOP2B (2022-06-29)
UB [auth AQ]SCOP2 FamilyRibosomal protein S26e8096935 4006236 SCOP2 (2022-06-29)
UB [auth AQ]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8096936 3000068 SCOP2 (2022-06-29)
WB [auth AS]SCOP2B SuperfamilyNucleic acid-binding proteins8096944 3000135 SCOP2B (2022-06-29)
XB [auth AT]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8096926 3000068 SCOP2B (2022-06-29)
YB [auth AU]SCOP2B SuperfamilyRibosomal protein S30e-like8053451 3002190 SCOP2B (2022-06-29)
CC [auth L1]SCOP2 FamilyRibosomal protein L1p/L10e-like8096939 4002929 SCOP2 (2022-06-29)
CC [auth L1]SCOP2 SuperfamilyRibosomal protein L1p/L10e-like8096940 3001911 SCOP2 (2022-06-29)
ISCOP2 FamilyRibosomal protein L10e8101312 4001135 SCOP2 (2022-06-29)
ISCOP2 SuperfamilyRibosomal protein L16p/L10e8101313 3000884 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00181e6xiqA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e6xiqA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
JPF00281,PF00673e6xiqJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
K [auth L]PF01294e6xiqL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
L [auth M]PF00467,PF01929e6xiqM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
M [auth N]PF00827e6xiqN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
N [auth O]PF00572e6xiqO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
O [auth P]PF00237e6xiqP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
P [auth Q]PF17135e6xiqQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
Q [auth R]PF01280e6xiqR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Q [auth R]PF01280e6xiqR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
R [auth S]F_UNCLASSIFIEDe6xiqS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
R [auth S]PF01775e6xiqS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
S [auth T]PF01157e6xiqT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
BPF00297e6xiqB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
T [auth U]PF01776e6xiqU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
U [auth V]PF00238e6xiqV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
V [auth W]PF01246e6xiqW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
W [auth X]PF00276,PF03939e6xiqX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
X [auth Y]PF16906e6xiqY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
Y [auth Z]PF01777e6xiqZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
Z [auth AA]PF03501e6xiqAA1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
AA [auth AB]PF00366,PF16205e6xiqAB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
CPF00573e6xiqC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
CPF14374e6xiqC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
EA [auth P0]PF00466e6xiqP02 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
EA [auth P0]PF17777e6xiqP01 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
FA [auth P2]PF00298e6xiqP21 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
FA [auth P2]F_UNCLASSIFIEDe6xiqP22 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
GA [auth a]PF00828e6xiqa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
HA [auth b]PF01779e6xiqb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
IA [auth c]PF01248e6xiqc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
JA [auth d]PF01198e6xiqd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
KA [auth e]PF01655e6xiqe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
LA [auth f]PF01247e6xiqf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
MA [auth g]PF01199e6xiqg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
DPF14204,PF17144e6xiqD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
NA [auth h]PF00831e6xiqh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
OA [auth i]PF01158e6xiqi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
PA [auth j]PF01907e6xiqj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
QA [auth k]PF01781e6xiqk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
RA [auth l]PF00832e6xiql1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
SA [auth m]PF01020e6xiqm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
TA [auth n]PF05162e6xiqn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
UA [auth o]PF00935e6xiqo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
VA [auth p]PF01780e6xiqp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
EPF01159e6xiqE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
XA [auth q]PF00318e6xiqq1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
YA [auth r]PF01015e6xiqr1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
YA [auth r]PF01015e6xiqr2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
ZA [auth s]PF03719e6xiqs2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
ZA [auth s]PF00333e6xiqs1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
ZA [auth s]PF00333e6xiqs3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
AB [auth t]PF00189e6xiqt2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
AB [auth t]PF07650e6xiqt1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
BB [auth u]PF00900e6xiqu1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
BB [auth u]PF00467,PF16121e6xiqu2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
BB [auth u]PF00900,PF01479,PF08071e6xiqu3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
CB [auth v]PF00177e6xiqv1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
DB [auth w]PF01092e6xiqw1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
EB [auth x]PF01251e6xiqx1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
FB [auth y]PF01201e6xiqy1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
GB [auth z]PF00163,PF01479e6xiqz1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
FPF00327,PF08079e6xiqF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
HB [auth AD]PF08069e6xiqAD1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
HB [auth AD]PF00312e6xiqAD2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
IB [auth AE]PF00411e6xiqAE1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
JB [auth AF]PF00203e6xiqAF1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
KB [auth AG]PF00380e6xiqAG1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
LB [auth AH]PF00833e6xiqAH1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
MB [auth AI]PF00416e6xiqAI1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
NB [auth AJ]PF01090e6xiqAJ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
OB [auth AK]PF00338e6xiqAK1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
PB [auth AL]PF01249e6xiqAL1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
QB [auth AM]PF00410e6xiqAM1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
QB [auth AM]PF00410e6xiqAM2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
GPF01248e6xiqG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
RB [auth AN]PF00164e6xiqAN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
SB [auth AO]PF01282e6xiqAO1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
TB [auth AP]PF03297e6xiqAP1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
UB [auth AQ]PF01283e6xiqAQ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
VB [auth AR]PF01667e6xiqAR1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
WB [auth AS]PF01200e6xiqAS1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
XB [auth AT]PF00253e6xiqAT1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
YB [auth AU]PF04758e6xiqAU1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
ZB [auth AV]PF00400e6xiqAV1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
HPF00347e6xiqH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
CC [auth L1]PF00687e6xiqL12 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
CC [auth L1]PF00687e6xiqL11 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
IPF00252e6xiqI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
L [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
L [auth M]PF00467KOW motif (KOW)KOW motif- Family
M [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
N [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
O [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
P [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Q [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
R [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
S [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
T [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
U [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
V [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
W [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
W [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
X [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
X [auth Y]PF00467KOW motif (KOW)KOW motif- Family
Y [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
Z [auth AA]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
AA [auth AB]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
AA [auth AB]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
FA [auth P2]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
FA [auth P2]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
GA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
HA [auth b]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
IA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
JA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
KA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
LA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
MA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
NA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
OA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
PA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
QA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
RA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
SA [auth m]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
UA [auth o]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
VA [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
XA [auth q]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
YA [auth r]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
ZA [auth s]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
ZA [auth s]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
AB [auth t]PF07650KH domain (KH_2)KH domain- Domain
AB [auth t]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
BB [auth u]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
BB [auth u]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
BB [auth u]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
BB [auth u]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
BB [auth u]PF00467KOW motif (KOW)KOW motif- Family
CB [auth v]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
DB [auth w]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
EB [auth x]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
FB [auth y]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
GB [auth z]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
GB [auth z]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
HB [auth AD]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
HB [auth AD]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
IB [auth AE]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
JB [auth AF]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
KB [auth AG]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
LB [auth AH]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
MB [auth AI]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
NB [auth AJ]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
OB [auth AK]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PB [auth AL]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
QB [auth AM]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
RB [auth AN]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
SB [auth AO]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
TB [auth AP]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
UB [auth AQ]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
VB [auth AR]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
WB [auth AS]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
XB [auth AT]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
YB [auth AU]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
ZB [auth AV]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CC [auth L1]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L2-A
RPL11B isoform 1
K [auth L]60S ribosomal protein L13-A
L [auth M]60S ribosomal protein L14-A
M [auth N]60S ribosomal protein L15-A
N [auth O]60S ribosomal protein L16-A
O [auth P]60S ribosomal protein L17-A
P [auth Q]60S ribosomal protein L18-A
Q [auth R]60S ribosomal protein L19-A
R [auth S]60S ribosomal protein L20-A
S [auth T]60S ribosomal protein L21-A
RPL3 isoform 1
T [auth U]60S ribosomal protein L22-A
U [auth V]60S ribosomal protein L23-A
V [auth W]RPL24A isoform 1- - -
W [auth X]60S ribosomal protein L25
X [auth Y]60S ribosomal protein L26-A
Y [auth Z]60S ribosomal protein L27-A
Z [auth AA]40S ribosomal protein S10-A
AA [auth AB]40S ribosomal protein S11-A
BA [auth 1]35S ribosomal RNA---
CA [auth 3]5S ribosomal RNA---
RPL4A isoform 1
DA [auth 4]5.8S ribosomal RNA---
EA [auth P0]RPP0 isoform 1---
FA [auth P2]RPL12A isoform 1
GA [auth a]60S ribosomal protein L28
HA [auth b]RPL29 isoform 1
IA [auth c]60S ribosomal protein L30
JA [auth d]60S ribosomal protein L31-A
KA [auth e]RPL32 isoform 1
LA [auth f]60S ribosomal protein L33-A
MA [auth g]60S ribosomal protein L34-A
RPL5 isoform 1
NA [auth h]60S ribosomal protein L35-A
OA [auth i]60S ribosomal protein L36-A
PA [auth j]60S ribosomal protein L37-A
QA [auth k]RPL38 isoform 1
RA [auth l]60S ribosomal protein L39
SA [auth m]60S ribosomal protein L40
TA [auth n]RPL41A isoform 1---
UA [auth o]60S ribosomal protein L42-A
VA [auth p]60S ribosomal protein L43-A
WA [auth 2]18S ribosomal RNA---
60S ribosomal protein L6-A
XA [auth q]40S ribosomal protein S0-A
YA [auth r]RPS1A isoform 1
ZA [auth s]RPS2 isoform 1
AB [auth t]RPS3 isoform 1
BB [auth u]40S ribosomal protein S4-A
CB [auth v]Rps5p
DB [auth w]40S ribosomal protein S6-A
EB [auth x]40S ribosomal protein S7-A
FB [auth y]RPS8A isoform 1
GB [auth z]40S ribosomal protein S9-A
60S ribosomal protein L7-A
HB [auth AD]40S ribosomal protein S13
IB [auth AE]40S ribosomal protein S14-B
JB [auth AF]RPS15 isoform 1
KB [auth AG]40S ribosomal protein S16-A
LB [auth AH]40S ribosomal protein S17-B
MB [auth AI]40S ribosomal protein S18-A
NB [auth AJ]40S ribosomal protein S19-A
OB [auth AK]RPS20 isoform 1
PB [auth AL]40S ribosomal protein S21-A
QB [auth AM]RPS22A isoform 1
RPL8A isoform 1---
RB [auth AN]40S ribosomal protein S23-A
SB [auth AO]40S ribosomal protein S24-A
TB [auth AP]RPS25A isoform 1- -
UB [auth AQ]RPS26B isoform 1
VB [auth AR]40S ribosomal protein S27-A
WB [auth AS]RPS28A isoform 1
XB [auth AT]RPS29A isoform 1
YB [auth AU]40S ribosomal protein S30-A
ZB [auth AV]Guanine nucleotide-binding protein subunit beta-like protein
AC [auth AX],
DC [auth AZ]
Transfer RNA---
RPL9A isoform 1---
BC [auth AY]mRNA---
CC [auth L1]RPL1A isoform 1
RPL10 isoform 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR002132Large ribosomal subunit protein uL5Family
K [auth L]IPR001380Large ribosomal subunit protein eL13Family
K [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
L [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth M]IPR039660Large ribosomal subunit protein eL14Family
L [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
L [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth M]IPR005824KOWDomain
M [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
M [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
M [auth N]IPR000439Large ribosomal subunit protein eL15Family
N [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
N [auth O]IPR005822Large ribosomal subunit protein uL13Family
N [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
O [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth P]IPR001063Large ribosomal subunit protein uL22Family
O [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
P [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
P [auth Q]IPR000039Large ribosomal subunit protein eL18Family
P [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Q [auth R]IPR039547Large ribosomal subunit protein eL19Family
Q [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Q [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Q [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
Q [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
R [auth S]IPR028877Large ribosomal subunit protein eL20Family
R [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
R [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
S [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth T]IPR001147Large ribosomal subunit protein eL21Family
S [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
T [auth U]IPR002671Large ribosomal subunit protein eL22Family
T [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
U [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth V]IPR000218Large ribosomal subunit protein uL14Family
U [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
V [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
V [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
V [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
W [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
W [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
X [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth Y]IPR005824KOWDomain
X [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
X [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Y [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
Y [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
Y [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth Z]IPR001141Large ribosomal subunit protein eL27Family
Y [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Z [auth AA]IPR037447Small ribosomal subunit protein eS10Family
Z [auth AA]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Z [auth AA]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Z [auth AA]IPR005326Plectin/eS10, N-terminalDomain
AA [auth AB]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
AA [auth AB]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
AA [auth AB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth AB]IPR000266Small ribosomal subunit protein uS17Family
AA [auth AB]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth P2]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
FA [auth P2]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
FA [auth P2]IPR000911Ribosomal protein uL11Family
FA [auth P2]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
FA [auth P2]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
FA [auth P2]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
GA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
GA [auth a]IPR030878Large ribosomal subunit protein uL15Family
GA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
GA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
HA [auth b]IPR002673Large ribosomal subunit protein eL29Family
IA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
IA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
IA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
JA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
JA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
JA [auth d]IPR000054Large ribosomal subunit protein eL31Family
KA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
KA [auth e]IPR001515Large ribosomal subunit protein eL32Family
KA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
LA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
LA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
LA [auth f]IPR001780Large ribosomal subunit protein eL33Family
LA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
MA [auth g]IPR008195Large ribosomal subunit protein eL34Family
MA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
NA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
NA [auth h]IPR001854Large ribosomal subunit protein uL29Family
NA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
NA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
OA [auth i]IPR000509Large ribosomal subunit protein eL36Family
OA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
PA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
PA [auth j]IPR001569Large ribosomal subunit protein eL37Family
PA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
PA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth k]IPR002675Large ribosomal subunit protein eL38Family
QA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
RA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
RA [auth l]IPR000077Large ribosomal subunit protein eL39Family
RA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
SA [auth m]IPR019954Ubiquitin conserved siteConserved Site
SA [auth m]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
SA [auth m]IPR000626Ubiquitin-like domainDomain
SA [auth m]IPR019956Ubiquitin domainDomain
SA [auth m]IPR001975Large ribosomal subunit protein eL40 domainDomain
SA [auth m]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
UA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth o]IPR000552Large ribosomal subunit protein eL42Family
VA [auth p]IPR002674Large ribosomal subunit protein eL43Family
VA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
XA [auth q]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
XA [auth q]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
XA [auth q]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
XA [auth q]IPR001865Small ribosomal subunit protein uS2Family
XA [auth q]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
YA [auth r]IPR001593Small ribosomal subunit protein eS1Family
YA [auth r]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
YA [auth r]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
ZA [auth s]IPR000851Small ribosomal subunit protein uS5Family
ZA [auth s]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
ZA [auth s]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
ZA [auth s]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
ZA [auth s]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
ZA [auth s]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
ZA [auth s]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AB [auth t]IPR004044K Homology domain, type 2Domain
AB [auth t]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
AB [auth t]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
AB [auth t]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
AB [auth t]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
AB [auth t]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
AB [auth t]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
BB [auth u]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
BB [auth u]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
BB [auth u]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
BB [auth u]IPR002942RNA-binding S4 domainDomain
BB [auth u]IPR013845Small ribosomal subunit protein eS4, central regionDomain
BB [auth u]IPR000876Small ribosomal subunit protein eS4Family
BB [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BB [auth u]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
BB [auth u]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
BB [auth u]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
BB [auth u]IPR005824KOWDomain
CB [auth v]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
CB [auth v]IPR000235Small ribosomal subunit protein uS7Family
CB [auth v]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
CB [auth v]IPR023798Small ribosomal subunit protein uS7 domainDomain
CB [auth v]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
DB [auth w]IPR014401Small ribosomal subunit protein eS6-likeFamily
DB [auth w]IPR001377Small ribosomal subunit protein eS6Family
DB [auth w]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
EB [auth x]IPR000554Small ribosomal subunit protein eS7Family
EB [auth x]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
FB [auth y]IPR001047Small ribosomal subunit protein eS8Family
FB [auth y]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
FB [auth y]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
FB [auth y]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
GB [auth z]IPR002942RNA-binding S4 domainDomain
GB [auth z]IPR022801Small ribosomal subunit protein uS4Family
GB [auth z]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
GB [auth z]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
GB [auth z]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
GB [auth z]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
HB [auth AD]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
HB [auth AD]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
HB [auth AD]IPR000589Small ribosomal subunit protein uS15Family
HB [auth AD]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IB [auth AE]IPR001971Small ribosomal subunit protein uS11Family
IB [auth AE]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IB [auth AE]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
JB [auth AF]IPR002222Small ribosomal subunit protein uS19Family
JB [auth AF]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
JB [auth AF]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
JB [auth AF]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
KB [auth AG]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
KB [auth AG]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
KB [auth AG]IPR000754Small ribosomal subunit protein uS9Family
KB [auth AG]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LB [auth AH]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
LB [auth AH]IPR001210Small ribosomal subunit protein eS17Family
LB [auth AH]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
MB [auth AI]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
MB [auth AI]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
MB [auth AI]IPR001892Small ribosomal subunit protein uS13Family
MB [auth AI]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
NB [auth AJ]IPR001266Small ribosomal subunit protein eS19Family
NB [auth AJ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
NB [auth AJ]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
NB [auth AJ]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
OB [auth AK]IPR001848Small ribosomal subunit protein uS10Family
OB [auth AK]IPR027486Small ribosomal subunit protein uS10 domainDomain
OB [auth AK]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
OB [auth AK]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
OB [auth AK]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
PB [auth AL]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
PB [auth AL]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
PB [auth AL]IPR001931Small ribosomal subunit protein eS21Family
QB [auth AM]IPR000630Small ribosomal subunit protein uS8Family
QB [auth AM]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
QB [auth AM]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
RB [auth AN]IPR006032Small ribosomal subunit protein uS12Family
RB [auth AN]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RB [auth AN]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
SB [auth AO]IPR001976Small ribosomal subunit protein eS24Family
SB [auth AO]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
SB [auth AO]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
TB [auth AP]IPR004977Small ribosomal subunit protein eS25Family
TB [auth AP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
UB [auth AQ]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
UB [auth AQ]IPR000892Small ribosomal subunit protein eS26Family
UB [auth AQ]IPR047864Ribosomal protein eS26, conserved siteConserved Site
VB [auth AR]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
VB [auth AR]IPR000592Small ribosomal subunit protein eS27Family
VB [auth AR]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WB [auth AS]IPR028626Ribosomal protein eS28 conserved siteConserved Site
WB [auth AS]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WB [auth AS]IPR000289Small ribosomal subunit protein eS28Family
XB [auth AT]IPR001209Small ribosomal subunit protein uS14Family
XB [auth AT]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
XB [auth AT]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
XB [auth AT]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
YB [auth AU]IPR006846Small ribosomal subunit protein eS30Family
ZB [auth AV]IPR019775WD40 repeat, conserved siteConserved Site
ZB [auth AV]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
ZB [auth AV]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ZB [auth AV]IPR045223Small ribosomal subunit protein RACK1-likeFamily
ZB [auth AV]IPR001680WD40 repeatRepeat
ZB [auth AV]IPR020472G-protein beta WD-40 repeatRepeat
CC [auth L1]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
CC [auth L1]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
CC [auth L1]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
CC [auth L1]IPR002143Large ribosomal subunit protein uL1Family
CC [auth L1]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site