Annotations: 6XGS

Crystal Structure of Dihydrodipicolinate synthase (DHDPS) from Brucella suis 1330

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6xgsd1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
D	d6xgsd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
C	d6xgsc1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
C	d6xgsc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
B	d6xgsb1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
B	d6xgsb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
A	d6xgsa1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)
A	d6xgsa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella suis 1330 ) [TaxId: 204722 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Aldolase	8100130	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8100130	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8100130	3000445	SCOP2B (2022-06-29)
A	SCOP2 Family	Class I aldolase	8100129	4003216	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Aldolase	8100130	3000445	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MCM_OB	e6xgsD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: MCM_OB	ECOD (v294.1)
C	MCM_OB	e6xgsC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: MCM_OB	ECOD (v294.1)
B	MCM_OB	e6xgsB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: MCM_OB	ECOD (v294.1)
A	MCM_OB	e6xgsA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: MCM_OB	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	4-hydroxy-tetrahydrodipicolinate synthase	4-hydroxy-tetrahydrodipicolinate synthase activity amine-lyase activity lyase activity catalytic activity carbon-nitrogen lyase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR005263	4-hydroxy-tetrahydrodipicolinate synthase, DapA	Family
A, B, C, D	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D	IPR020625	Schiff base-forming aldolase, active site	Active Site
A, B, C, D	IPR002220	DapA-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.