6WDZ | pdb_00006wdz

Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth A]	Viral_Rep	e6wdzA1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Viral_Rep	ECOD (1.6)
D [auth G]	Viral_Rep	e6wdzG1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Viral_Rep	ECOD (1.6)
B [auth D]	Viral_Rep	e6wdzD1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Viral_Rep	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth D], D [auth G], G [auth A]	PF02407	Putative viral replication protein (Viral_Rep)	Putative viral replication protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth D], D [auth G], G [auth A]	ATP-dependent helicase Rep	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity endonuclease activity nuclease activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA binding cation binding metal ion binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication rolling circle single-stranded viral DNA replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process viral DNA strand displacement replication nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication rolling circle single-stranded viral DNA replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process viral DNA strand displacement replication nucleic acid biosynthetic process biosynthetic process viral genome replication viral process rolling circle viral DNA replication DNA biosynthetic process	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth C], C [auth I], E [auth F], F [auth J]	DNA (5'-D(TPAPGPTPAPTPTPAPCPC)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D], D [auth G], G [auth A]	IPR049912	CRESS-DNA virus replication initiator protein, endonuclease domain	Domain
B [auth D], D [auth G], G [auth A]	IPR000605	Helicase, superfamily 3, single-stranded DNA/RNA virus	Domain
B [auth D], D [auth G], G [auth A]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.