6VJ5 | pdb_00006vj5

Structure of PE25-PPE41(A124L) in complex with EspG5 chaperone from the type VII (ESX-5) secretion system

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6vj5a_	All alpha proteins	Ferritin-like	PE/PPE dimer-like	PE	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
B	d6vj5b_	All alpha proteins	Ferritin-like	PE/PPE dimer-like	PPE	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PE/PPE dimer-like	8041619	3001123	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PE	e6vj5A1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: PE (From Topology)	T: PE	F: PE	ECOD (1.6)
C	ESX-1_EspG	e6vj5C1	A: a+b two layers	X: MybT EspG5 chaperone (From Topology)	H: MybT EspG5 chaperone (From Topology)	T: MybT EspG5 chaperone	F: ESX-1_EspG	ECOD (1.6)
B	PPE	e6vj5B1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: PPE (From Topology)	T: PPE	F: PPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF14011	EspG family (ESX-1_EspG)	EspG family	-	Family
B	PF00823	PPE family (PPE)	PPE family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PE-PGRS family protein PE25	protein heterodimerization activity protein binding binding protein dimerization activity	protein-containing complex organization protein trimerization protein heterotrimerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis protein heterooligomerization	cellular anatomical structure extracellular region
C	ESX-5 secretion-associated protein EspG5	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
B	PPE family protein PPE41	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction response to host immune response response to host response to external biotic stimulus	cell surface cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000084	PE-PGRS family, N-terminal	Domain
C	IPR025734	EspG family	Family
B	IPR038332	PPE superfamily	Homologous Superfamily
B	IPR000030	PPE domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.