6V8S

Crystal structure of Ara h 8.0201


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6v8sa_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Bd6v8sb_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Cd6v8sc_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Dd6v8sd_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Ed6v8se_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Fd6v8sf_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Gd6v8sg_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Hd6v8sh_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Id6v8si_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Jd6v8sj_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Kd6v8sk_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Ld6v8sl_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Md6v8sm_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Nd6v8sn_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Od6v8so_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)
Pd6v8sp_ Alpha and beta proteins (a+b) TBP-like Bet v1-like Pathogenesis-related protein 10 (PR10)-like automated matches Peanut (Arachis hypogaea ) [TaxId: 3818 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
HSCOP2 FamilyPathogenesis-related protein 10 (PR10)-like8102057 4002047 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyBet v1-like8102058 3000738 SCOP2 (2022-06-29)
ISCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyBet v1-like8102058 3000738 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00407e6v8sA1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
BPF00407e6v8sB1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
CPF00407e6v8sC1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
DPF00407e6v8sD1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
EPF00407e6v8sE1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
FPF00407e6v8sF1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
GPF00407e6v8sG1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
HPF00407e6v8sH1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
IPF00407e6v8sI1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
JPF00407e6v8sJ1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
KPF00407e6v8sK1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
LPF00407e6v8sL1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
MPF00407e6v8sM1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
NPF00407e6v8sN1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
OPF00407e6v8sO1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)
PPF00407e6v8sP1 A: a+b two layersX: TBP-likeH: Bet v1-like (From Topology)T: Bet v1-likeF: PF00407ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00407Pathogenesis-related protein Bet v 1 family (Bet_v_1)Pathogenesis-related protein Bet v 1 familyThis family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent ye ...This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10 [2]: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1 (Swiss:Q8H1L1), an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones [3]. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine [4]. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber [4]. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens (Swiss:Q9AXI3).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ara h 8 allergen isoform

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR024949Bet v I type allergenFamily
A, B, C, D, E
IPR000916Bet v I/Major latex proteinDomain
A, B, C, D, E
IPR023393START-like domain superfamilyHomologous Superfamily