6V8I | pdb_00006v8i

Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
TB [auth EI]	YscJ_FliF	e6v8iEI2	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
SB [auth EG]	YscJ_FliF	e6v8iEG1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
RB [auth EH]	YscJ_FliF	e6v8iEH1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
QB [auth CI]	YscJ_FliF	e6v8iCI1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
PB [auth CG]	YscJ_FliF	e6v8iCG1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
OB [auth CH]	YscJ_FliF	e6v8iCH1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
NB [auth FI]	YscJ_FliF	e6v8iFI1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
MB [auth FG]	YscJ_FliF	e6v8iFG1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
LB [auth FH]	YscJ_FliF	e6v8iFH1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
KB [auth AI]	YscJ_FliF	e6v8iAI2	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
JB [auth AG]	YscJ_FliF	e6v8iAG1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
IB [auth AH]	YscJ_FliF	e6v8iAH1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
HB [auth DI]	YscJ_FliF	e6v8iDI1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
GB [auth DG]	YscJ_FliF	e6v8iDG1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
FB [auth DH]	YscJ_FliF	e6v8iDH1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
EB [auth BI]	YscJ_FliF	e6v8iBI2	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
DB [auth BG]	CoV_S2	e6v8iBG1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related	F: CoV_S2	ECOD (v294.2)
CB [auth BH]	YscJ_FliF	e6v8iBH1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
ZA [auth FA]	YscJ_FliF	e6v8iFA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
YA [auth FB]	YscJ_FliF	e6v8iFB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
XA [auth AA]	YscJ_FliF	e6v8iAA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
WA [auth AB]	YscJ_FliF	e6v8iAB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
VA [auth DA]	YscJ_FliF	e6v8iDA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
UA [auth DB]	YscJ_FliF	e6v8iDB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
TA [auth BA]	YscJ_FliF	e6v8iBA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
SA [auth BB]	YscJ_FliF	e6v8iBB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
RA [auth EA]	YscJ_FliF	e6v8iEA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
QA [auth EB]	YscJ_FliF	e6v8iEB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
BB [auth CA]	YscJ_FliF	e6v8iCA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
AB [auth CB]	YscJ_FliF	e6v8iCB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
PA [auth EM]	YscJ_FliF	e6v8iEM1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
OA [auth EN]	YscJ_FliF	e6v8iEN1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
NA [auth CM]	YscJ_FliF	e6v8iCM1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
MA [auth CN]	YscJ_FliF	e6v8iCN1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
LA [auth FM]	YscJ_FliF	e6v8iFM1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
KA [auth FN]	YscJ_FliF	e6v8iFN1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
JA [auth AM]	YscJ_FliF	e6v8iAM1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
IA [auth AN]	YscJ_FliF	e6v8iAN1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
HA [auth DM]	YscJ_FliF	e6v8iDM1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
GA [auth DN]	YscJ_FliF	e6v8iDN1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)
FA [auth BM]	CoV_S2	e6v8iBM1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related	F: CoV_S2	ECOD (v294.2)
EA [auth BN]	YscJ_FliF	e6v8iBN1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], HB [auth DI], IB [auth AH], JB [auth AG], KB [auth AI], LB [auth FH], MB [auth FG], NB [auth FI], OB [auth CH], PB [auth CG], QB [auth CI], RB [auth EH], SB [auth EG], TB [auth EI]	PF21311	Phage 5-bladed beta propeller receptor binding platform domain (Phage_RBD_prop)	Phage 5-bladed beta propeller receptor binding platform domain	-	Repeat
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	PF06199	Phage tail tube protein (Phage_tail_2)	Phage tail tube protein	-	Family
EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], JA [auth AM], KA [auth FN], LA [auth FM], MA [auth CN], NA [auth CM], OA [auth EN], PA [auth EM]	PF10651	BppU N-terminal domain (BppU_N)	BppU N-terminal domain	This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold [1].	Domain
AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], N [auth BK], O [auth BL], P [auth DJ], Q [auth DK], R [auth DL], S [auth AJ], T [auth AK], U [auth AL], V [auth FJ], W [auth FK], X [auth FL], Y [auth CJ], Z [auth CK]	PF10651	BppU N-terminal domain (BppU_N)	BppU N-terminal domain	This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold [1].	Domain
C [auth AE], G [auth CE], K [auth BE]	PF06605	Prophage endopeptidase tail (Prophage_tail)	Prophage endopeptidase tail	-	Family
A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], J [auth BD]	PF05709	Phage tail protein RIFT-related domain (Sipho_tail)	Phage tail protein RIFT-related domain	This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. This entry represents the N-terminal RIFT-related barrel domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], HB [auth DI], IB [auth AH], JB [auth AG], KB [auth AI], LB [auth FH], MB [auth FG], NB [auth FI], OB [auth CH], PB [auth CG], QB [auth CI], RB [auth EH], SB [auth EG], TB [auth EI]	Receptor Binding Protein, gp61	-	-	-
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	Major Tail Protein, gp53	-	-	-
EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], JA [auth AM], KA [auth FN], LA [auth FM], MA [auth CN], NA [auth CM], OA [auth EN], PA [auth EM]	Fiber Upper, gp68	-	-	-
AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], N [auth BK], O [auth BL], P [auth DJ], Q [auth DK], R [auth DL], S [auth AJ], T [auth AK], U [auth AL], V [auth FJ], W [auth FK], X [auth FL], Y [auth CJ], Z [auth CK]	Fiber Lower, gp62	-	-	-
D [auth CF], H [auth BF], L [auth AF]	Tape Measure Protein, gp57	-	-	-
C [auth AE], G [auth CE], K [auth BE]	Tail-Associated Lysin, gp59	lysophospholipase A1 activity phospholipase activity hydrolase activity, acting on ester bonds glycerophospholipase activity carboxylic ester hydrolase activity A1-type glycerophospholipase activity hydrolase activity phosphatidylcholine lysophospholipase A1 activity catalytic activity lipase activity	-	-
A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], J [auth BD]	Distal Tail Protein, gp58	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], HB [auth DI], IB [auth AH], JB [auth AG], KB [auth AI], LB [auth FH], MB [auth FG], NB [auth FI], OB [auth CH], PB [auth CG], QB [auth CI], RB [auth EH], SB [auth EG], TB [auth EI]	IPR048799	P68 RBP/TagC-like, beta-propeller	Domain
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	IPR011855	Phage major tail protein TP901-1	Family
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	IPR022345	Bacteriophage 69, Orf23, major tail protein	Family
EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], JA [auth AM], KA [auth FN], LA [auth FM], MA [auth CN], NA [auth CM], OA [auth EN], PA [auth EM]	IPR018913	BppU, N-terminal	Domain
AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], N [auth BK], O [auth BL], P [auth DJ], Q [auth DK], R [auth DL], S [auth AJ], T [auth AK], U [auth AL], V [auth FJ], W [auth FK], X [auth FL], Y [auth CJ], Z [auth CK]	IPR018913	BppU, N-terminal	Domain
D [auth CF], H [auth BF], L [auth AF]	IPR016024	Armadillo-type fold	Homologous Superfamily
C [auth AE], G [auth CE], K [auth BE]	IPR013830	SGNH hydrolase-type esterase domain	Domain
C [auth AE], G [auth CE], K [auth BE]	IPR056060	Tal, N-terminal tail tube TT1 domain	Domain
C [auth AE], G [auth CE], K [auth BE]	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
C [auth AE], G [auth CE], K [auth BE]	IPR010572	Tail spike domain	Domain
C [auth AE], G [auth CE], K [auth BE]	IPR051532	Diverse Ester Hydrolysis Enzymes	Family
A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], J [auth BD]	IPR008841	Siphovirus-type tail component, RIFT-related domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.