Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| TB [auth EI] | e6v8iEI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| SB [auth EG] | e6v8iEG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| RB [auth EH] | e6v8iEH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| QB [auth CI] | e6v8iCI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| PB [auth CG] | e6v8iCG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| OB [auth CH] | e6v8iCH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| NB [auth FI] | e6v8iFI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| MB [auth FG] | e6v8iFG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| LB [auth FH] | e6v8iFH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| KB [auth AI] | e6v8iAI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| JB [auth AG] | e6v8iAG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| IB [auth AH] | e6v8iAH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| HB [auth DI] | e6v8iDI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| GB [auth DG] | e6v8iDG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| FB [auth DH] | e6v8iDH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| EB [auth BI] | e6v8iBI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| DB [auth BG] | e6v8iBG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: MacB_PCD | F: | ECOD (20:10:01) | |
| CB [auth BH] | e6v8iBH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| ZA [auth FA] | e6v8iFA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| YA [auth FB] | e6v8iFB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| XA [auth AA] | e6v8iAA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| WA [auth AB] | e6v8iAB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| VA [auth DA] | e6v8iDA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| UA [auth DB] | e6v8iDB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| TA [auth BA] | e6v8iBA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| SA [auth BB] | e6v8iBB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| RA [auth EA] | e6v8iEA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| QA [auth EB] | e6v8iEB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| BB [auth CA] | e6v8iCA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| AB [auth CB] | e6v8iCB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| PA [auth EM] | e6v8iEM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| OA [auth EN] | e6v8iEN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| NA [auth CM] | e6v8iCM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| MA [auth CN] | e6v8iCN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| LA [auth FM] | e6v8iFM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| KA [auth FN] | e6v8iFN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| JA [auth AM] | e6v8iAM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| IA [auth AN] | e6v8iAN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| HA [auth DM] | e6v8iDM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| GA [auth DN] | e6v8iDN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) | |
| FA [auth BM] | e6v8iBM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: MacB_PCD | F: | ECOD (20:10:01) | |
| EA [auth BN] | e6v8iBN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: YscJ_FliF | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF21311 | Phage 5-bladed beta propeller receptor binding platform domain (Phage_RBD_prop) | Phage 5-bladed beta propeller receptor binding platform domain | - | Repeat | |
| PF06199 | Phage tail tube protein (Phage_tail_2) | Phage tail tube protein | - | Family | |
| PF10651 | BppU N-terminal domain (BppU_N) | BppU N-terminal domain | This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold [1]. | Domain | |
| PF10651 | BppU N-terminal domain (BppU_N) | BppU N-terminal domain | This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold [1]. | Domain | |
| C [auth AE], G [auth CE], K [auth BE] | PF06605 | Prophage endopeptidase tail (Prophage_tail) | Prophage endopeptidase tail | - | Family |
| PF05709 | Phage tail protein RIFT-related domain (Sipho_tail) | Phage tail protein RIFT-related domain | This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. This entry represents the N-terminal RIFT-related barrel domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Receptor Binding Protein, gp61 | - | - | - | |
| Major Tail Protein, gp53 | - | - | - | |
| Fiber Upper, gp68 | - | - | - | |
| Fiber Lower, gp62 | - | - | - | |
| D [auth CF], H [auth BF], L [auth AF] | Tape Measure Protein, gp57 | - | - | - |
| C [auth AE], G [auth CE], K [auth BE] | Tail-Associated Lysin, gp59 | - | - | |
| Distal Tail Protein, gp58 | - | - | - |
