6V8I | pdb_00006v8i

Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
TB [auth EI]	YscJ_FliF	e6v8iEI2	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
SB [auth EG]	YscJ_FliF	e6v8iEG1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
RB [auth EH]	YscJ_FliF	e6v8iEH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
QB [auth CI]	YscJ_FliF	e6v8iCI1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
PB [auth CG]	YscJ_FliF	e6v8iCG1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
OB [auth CH]	YscJ_FliF	e6v8iCH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
NB [auth FI]	YscJ_FliF	e6v8iFI1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
MB [auth FG]	YscJ_FliF	e6v8iFG1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
LB [auth FH]	YscJ_FliF	e6v8iFH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
KB [auth AI]	YscJ_FliF	e6v8iAI2	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
JB [auth AG]	YscJ_FliF	e6v8iAG1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
IB [auth AH]	YscJ_FliF	e6v8iAH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
HB [auth DI]	YscJ_FliF	e6v8iDI1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
GB [auth DG]	YscJ_FliF	e6v8iDG1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
FB [auth DH]	YscJ_FliF	e6v8iDH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
EB [auth BI]	YscJ_FliF	e6v8iBI2	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
DB [auth BG]	MacB_PCD	e6v8iBG1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related	F: MacB_PCD	ECOD (v294.1)
CB [auth BH]	YscJ_FliF	e6v8iBH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
ZA [auth FA]	YscJ_FliF	e6v8iFA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
YA [auth FB]	YscJ_FliF	e6v8iFB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
XA [auth AA]	YscJ_FliF	e6v8iAA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
WA [auth AB]	YscJ_FliF	e6v8iAB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
VA [auth DA]	YscJ_FliF	e6v8iDA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
UA [auth DB]	YscJ_FliF	e6v8iDB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
TA [auth BA]	YscJ_FliF	e6v8iBA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
SA [auth BB]	YscJ_FliF	e6v8iBB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
RA [auth EA]	YscJ_FliF	e6v8iEA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
QA [auth EB]	YscJ_FliF	e6v8iEB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
BB [auth CA]	YscJ_FliF	e6v8iCA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
AB [auth CB]	YscJ_FliF	e6v8iCB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
PA [auth EM]	YscJ_FliF	e6v8iEM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
OA [auth EN]	YscJ_FliF	e6v8iEN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
NA [auth CM]	YscJ_FliF	e6v8iCM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
MA [auth CN]	YscJ_FliF	e6v8iCN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
LA [auth FM]	YscJ_FliF	e6v8iFM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
KA [auth FN]	YscJ_FliF	e6v8iFN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
JA [auth AM]	YscJ_FliF	e6v8iAM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
IA [auth AN]	YscJ_FliF	e6v8iAN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
HA [auth DM]	YscJ_FliF	e6v8iDM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
GA [auth DN]	YscJ_FliF	e6v8iDN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)
FA [auth BM]	MacB_PCD	e6v8iBM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related	F: MacB_PCD	ECOD (v294.1)
EA [auth BN]	YscJ_FliF	e6v8iBN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: YscJ_FliF	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], HB [auth DI], IB [auth AH], JB [auth AG], KB [auth AI], LB [auth FH], MB [auth FG], NB [auth FI], OB [auth CH], PB [auth CG], QB [auth CI], RB [auth EH], SB [auth EG], TB [auth EI]	PF21311	Phage 5-bladed beta propeller receptor binding platform domain (Phage_RBD_prop)	Phage 5-bladed beta propeller receptor binding platform domain	-	Repeat
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	PF06199	Phage tail tube protein (Phage_tail_2)	Phage tail tube protein	-	Family
EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], JA [auth AM], KA [auth FN], LA [auth FM], MA [auth CN], NA [auth CM], OA [auth EN], PA [auth EM]	PF10651	BppU N-terminal domain (BppU_N)	BppU N-terminal domain	This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold [1].	Domain
AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], N [auth BK], O [auth BL], P [auth DJ], Q [auth DK], R [auth DL], S [auth AJ], T [auth AK], U [auth AL], V [auth FJ], W [auth FK], X [auth FL], Y [auth CJ], Z [auth CK]	PF10651	BppU N-terminal domain (BppU_N)	BppU N-terminal domain	This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold [1].	Domain
C [auth AE], G [auth CE], K [auth BE]	PF06605	Prophage endopeptidase tail (Prophage_tail)	Prophage endopeptidase tail	-	Family
A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], J [auth BD]	PF05709	Phage tail protein RIFT-related domain (Sipho_tail)	Phage tail protein RIFT-related domain	This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. This entry represents the N-terminal RIFT-related barrel domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], HB [auth DI], IB [auth AH], JB [auth AG], KB [auth AI], LB [auth FH], MB [auth FG], NB [auth FI], OB [auth CH], PB [auth CG], QB [auth CI], RB [auth EH], SB [auth EG], TB [auth EI]	Receptor Binding Protein, gp61	-	-	-
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	Major Tail Protein, gp53	-	-	-
EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], JA [auth AM], KA [auth FN], LA [auth FM], MA [auth CN], NA [auth CM], OA [auth EN], PA [auth EM]	Fiber Upper, gp68	-	-	-
AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], N [auth BK], O [auth BL], P [auth DJ], Q [auth DK], R [auth DL], S [auth AJ], T [auth AK], U [auth AL], V [auth FJ], W [auth FK], X [auth FL], Y [auth CJ], Z [auth CK]	Fiber Lower, gp62	-	-	-
D [auth CF], H [auth BF], L [auth AF]	Tape Measure Protein, gp57	-	-	-
C [auth AE], G [auth CE], K [auth BE]	Tail-Associated Lysin, gp59	lysophospholipase A1 activity phospholipase activity hydrolase activity, acting on ester bonds glycerophospholipase activity carboxylic ester hydrolase activity A1-type glycerophospholipase activity hydrolase activity phosphatidylcholine lysophospholipase A1 activity catalytic activity lipase activity	-	-
A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], J [auth BD]	Distal Tail Protein, gp58	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], CB [auth BH], DB [auth BG], EB [auth BI], FB [auth DH], GB [auth DG], HB [auth DI], IB [auth AH], JB [auth AG], KB [auth AI], LB [auth FH], MB [auth FG], NB [auth FI], OB [auth CH], PB [auth CG], QB [auth CI], RB [auth EH], SB [auth EG], TB [auth EI]	IPR048799	P68 RBP/TagC-like, beta-propeller	Domain
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	IPR011855	Phage major tail protein TP901-1	Family
AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], AB [auth CB], BB [auth CA], QA [auth EB], RA [auth EA], SA [auth BB], TA [auth BA], UA [auth DB], VA [auth DA], WA [auth AB], XA [auth AA], YA [auth FB], ZA [auth FA]	IPR022345	Bacteriophage 69, Orf23, major tail protein	Family
EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], EA [auth BN], FA [auth BM], GA [auth DN], HA [auth DM], IA [auth AN], JA [auth AM], KA [auth FN], LA [auth FM], MA [auth CN], NA [auth CM], OA [auth EN], PA [auth EM]	IPR018913	BppU, N-terminal	Domain
AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], AA [auth CL], BA [auth EJ], CA [auth EK], DA [auth EL], M [auth BJ], N [auth BK], O [auth BL], P [auth DJ], Q [auth DK], R [auth DL], S [auth AJ], T [auth AK], U [auth AL], V [auth FJ], W [auth FK], X [auth FL], Y [auth CJ], Z [auth CK]	IPR018913	BppU, N-terminal	Domain
D [auth CF], H [auth BF], L [auth AF]	IPR016024	Armadillo-type fold	Homologous Superfamily
C [auth AE], G [auth CE], K [auth BE]	IPR013830	SGNH hydrolase-type esterase domain	Domain
C [auth AE], G [auth CE], K [auth BE]	IPR056060	Tal, N-terminal tail tube TT1 domain	Domain
C [auth AE], G [auth CE], K [auth BE]	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
C [auth AE], G [auth CE], K [auth BE]	IPR010572	Tail spike domain	Domain
C [auth AE], G [auth CE], K [auth BE]	IPR051532	Diverse Ester Hydrolysis Enzymes	Family
A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], A [auth AC], B [auth AD], E [auth CC], F [auth CD], I [auth BC], J [auth BD]	IPR008841	Siphovirus-type tail component, RIFT-related domain	Domain