K.lactis 80S ribosome with p/PE tRNA and eIF5B
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E [auth AB] | SCOP2B Superfamily | Translational proteins | 8078361 | 3000811 | SCOP2B (2022-06-29) |
| G [auth AD] | SCOP2B Superfamily | Translational machinery components | 8052880 | 3000571 | SCOP2B (2022-06-29) |
| H [auth AE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053108 | 3000334 | SCOP2B (2022-06-29) |
| I [auth AF] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052929 | 3001378 | SCOP2B (2022-06-29) |
| I [auth AF] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052928 | 3002152 | SCOP2B (2022-06-29) |
| M [auth AJ] | SCOP2B Superfamily | RL5-like | 8073886 | 3001709 | SCOP2B (2022-06-29) |
| N [auth AL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053160 | 3002162 | SCOP2B (2022-06-29) |
| S [auth AQ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095979 | 3001045 | SCOP2B (2022-06-29) |
| W [auth AU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053065 | 3002158 | SCOP2B (2022-06-29) |
| Z [auth AX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095964 | 3000210 | SCOP2B (2022-06-29) |
| AA [auth AY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076758 | 3000334 | SCOP2B (2022-06-29) |
| BA [auth AZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053054 | 3000334 | SCOP2B (2022-06-29) |
| CA [auth Ba] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8100165 | 4003555 | SCOP2 (2022-06-29) |
| CA [auth Ba] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8100166 | 3001045 | SCOP2 (2022-06-29) |
| DA [auth Bb] | SCOP2B Superfamily | Ribosomal protein L29e | 8053043 | 3002157 | SCOP2B (2022-06-29) |
| EA [auth Bc] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8093829 | 4001513 | SCOP2 (2022-06-29) |
| EA [auth Bc] | SCOP2 Superfamily | L30e-like | 8093830 | 3001739 | SCOP2 (2022-06-29) |
| GA [auth Be] | SCOP2 Family | Ribosomal protein L32e | 8101652 | 4003517 | SCOP2 (2022-06-29) |
| GA [auth Be] | SCOP2 Superfamily | Ribosomal protein L32e | 8101653 | 3000982 | SCOP2 (2022-06-29) |
| HA [auth Bf] | SCOP2 Family | Ribosomal protein L35ae | 8093853 | 4003173 | SCOP2 (2022-06-29) |
| HA [auth Bf] | SCOP2 Superfamily | Translational proteins | 8093854 | 3000811 | SCOP2 (2022-06-29) |
| KA [auth Bi] | SCOP2B Superfamily | Ribosomal protein L36e | 8053123 | 3002161 | SCOP2B (2022-06-29) |
| OA [auth Bm] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101763 | 3001320 | SCOP2B (2022-06-29) |
| RA [auth Bp] | SCOP2 Family | Ribosomal protein L37ae | 8099787 | 4003704 | SCOP2 (2022-06-29) |
| RA [auth Bp] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8099788 | 3001320 | SCOP2 (2022-06-29) |
| SA [auth Bq] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8099792 | 3001911 | SCOP2B (2022-06-29) |
| VA [auth A] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8061284 | 3001397 | SCOP2B (2022-06-29) |
| WA [auth B] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053210 | 3002166 | SCOP2B (2022-06-29) |
| ZA [auth E] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052744 | 3000334 | SCOP2B (2022-06-29) |
| ZA [auth E] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052742 | 3001473 | SCOP2B (2022-06-29) |
| ZA [auth E] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052743 | 3000135 | SCOP2B (2022-06-29) |
| BB [auth G] | SCOP2B Superfamily | GS N-terminal domain-like | 8053170 | 3000408 | SCOP2B (2022-06-29) |
| DB [auth I] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053086 | 3000433 | SCOP2B (2022-06-29) |
| GB [auth L] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052709 | 3002138 | SCOP2B (2022-06-29) |
| GB [auth L] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052711 | 3000135 | SCOP2B (2022-06-29) |
| HB [auth M] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8095636 | 4001513 | SCOP2 (2022-06-29) |
| HB [auth M] | SCOP2 Superfamily | L30e-like | 8095637 | 3001739 | SCOP2 (2022-06-29) |
| JB [auth O] | SCOP2B Superfamily | Translational machinery components | 8098604 | 3000571 | SCOP2B (2022-06-29) |
| LB [auth Q] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082695 | 3000100 | SCOP2B (2022-06-29) |
| NB [auth S] | SCOP2B Superfamily | S13-like H2TH domain | 8101655 | 3000053 | SCOP2B (2022-06-29) |
| PB [auth U] | SCOP2B Superfamily | Ribosomal protein S10 | 8099786 | 3001336 | SCOP2B (2022-06-29) |
| QB [auth V] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053138 | 3000068 | SCOP2B (2022-06-29) |
| UB [auth Z] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090993 | 3000034 | SCOP2B (2022-06-29) |
| VB [auth a] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053148 | 3000068 | SCOP2B (2022-06-29) |
| YB [auth d] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052587 | 3000068 | SCOP2B (2022-06-29) |
| ZB [auth e] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053456 | 3002190 | SCOP2B (2022-06-29) |
| BC [auth g] | SCOP2B Superfamily | WD40 repeat-like | 8101651 | 3001694 | SCOP2B (2022-06-29) |
| XB [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8098630 | 3000135 | SCOP2B (2022-06-29) |
| RB [auth W] | SCOP2B Superfamily | Ribosomal protein S8 | 8079075 | 3000709 | SCOP2B (2022-06-29) |
| IB [auth N] | SCOP2B Superfamily | Homeodomain-like | 8052967 | 3000001 | SCOP2B (2022-06-29) |
| IB [auth N] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052968 | 3001284 | SCOP2B (2022-06-29) |
| F [auth AC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052818 | 3002143 | SCOP2B (2022-06-29) |
| F [auth AC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052819 | 3001146 | SCOP2B (2022-06-29) |
| FB [auth K] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055704 | 3000034 | SCOP2B (2022-06-29) |
| AB [auth F] | SCOP2B Superfamily | Ribosomal protein S7 | 8065997 | 3000799 | SCOP2B (2022-06-29) |
| MA [auth Bk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053574 | 3002206 | SCOP2B (2022-06-29) |
| IA [auth Bg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053542 | 3002203 | SCOP2B (2022-06-29) |
| X [auth AV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072056 | 3000433 | SCOP2B (2022-06-29) |
| P [auth AN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082479 | 3000210 | SCOP2B (2022-06-29) |
| L [auth AI] | SCOP2 Family | Ribosomal protein L10e | 8099789 | 4001135 | SCOP2 (2022-06-29) |
| L [auth AI] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8099790 | 3000884 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth AA] | Histone | e6uz7AA1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| E [auth AB] | Histone | e6uz7AB1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| G [auth AD] | Histone | e6uz7AD1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| H [auth AE] | Histone | e6uz7AE1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| I [auth AF] | Histone | e6uz7AF1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| J [auth AG] | Histone | e6uz7AG1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| K [auth AH] | Histone | e6uz7AH1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| M [auth AJ] | Histone | e6uz7AJ1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| N [auth AL] | Histone | e6uz7AL1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| O [auth AM] | Histone | e6uz7AM1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| Q [auth AO] | Histone | e6uz7AO1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| R [auth AP] | Histone | e6uz7AP1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| S [auth AQ] | Histone | e6uz7AQ1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| T [auth AR] | Histone | e6uz7AR1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| W [auth AU] | Histone | e6uz7AU1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| Y [auth AW] | Histone | e6uz7AW1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| Z [auth AX] | Histone | e6uz7AX1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| AA [auth AY] | Histone | e6uz7AY1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| BA [auth AZ] | Histone | e6uz7AZ1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| CA [auth Ba] | Histone | e6uz7Ba1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| DA [auth Bb] | Histone | e6uz7Bb1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| EA [auth Bc] | Histone | e6uz7Bc1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| FA [auth Bd] | Histone | e6uz7Bd1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| GA [auth Be] | Histone | e6uz7Be1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| HA [auth Bf] | Histone | e6uz7Bf1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| JA [auth Bh] | Histone | e6uz7Bh1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| KA [auth Bi] | Histone | e6uz7Bi1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| LA [auth Bj] | Histone | e6uz7Bj1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| NA [auth Bl] | Histone | e6uz7Bl1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| OA [auth Bm] | Histone | e6uz7Bm1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| PA [auth Bn] | Histone | e6uz7Bn1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| QA [auth Bo] | Histone | e6uz7Bo1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| RA [auth Bp] | Histone | e6uz7Bp1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| SA [auth Bq] | Histone | e6uz7Bq1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| TA [auth Br] | Histone | e6uz7Br1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| VA [auth A] | Histone | e6uz7A1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| WA [auth B] | Histone | e6uz7B1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| XA [auth C] | Histone | e6uz7C1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| YA [auth D] | Histone | e6uz7D1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| ZA [auth E] | Histone | e6uz7E1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| BB [auth G] | Histone | e6uz7G1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| CB [auth H] | Histone | e6uz7H1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| DB [auth I] | Histone | e6uz7I1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| EB [auth J] | Histone | e6uz7J1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| GB [auth L] | Histone | e6uz7L1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| HB [auth M] | Histone | e6uz7M1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| JB [auth O] | Histone | e6uz7O1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| LB [auth Q] | Histone | e6uz7Q1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| MB [auth R] | Histone | e6uz7R1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| NB [auth S] | Histone | e6uz7S1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| OB [auth T] | Histone | e6uz7T1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| PB [auth U] | Histone | e6uz7U1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| QB [auth V] | Histone | e6uz7V1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| SB [auth X] | Histone | e6uz7X1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| TB [auth Y] | Histone | e6uz7Y1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| UB [auth Z] | Histone | e6uz7Z1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| VB [auth a] | Histone | e6uz7a1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| YB [auth d] | Histone | e6uz7d1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| ZB [auth e] | Histone | e6uz7e1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| AC [auth f] | Histone | e6uz7f1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| BC [auth g] | Histone | e6uz7g1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| DC [auth 1] | Histone | e6uz711 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| XB [auth c] | Histone | e6uz7c1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| WB [auth b] | Histone | e6uz7b1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| RB [auth W] | Histone | e6uz7W1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| KB [auth P] | Histone | e6uz7P1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| IB [auth N] | Histone | e6uz7N1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| F [auth AC] | Histone | e6uz7AC2 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| F [auth AC] | Ald_deCOase | e6uz7AC1 | A: alpha bundles | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ald_deCOase | ECOD (develop294) |
| FB [auth K] | Histone | e6uz7K1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| AB [auth F] | Histone | e6uz7F1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| MA [auth Bk] | Histone | e6uz7Bk1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| IA [auth Bg] | Histone | e6uz7Bg1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| X [auth AV] | Histone | e6uz7AV1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| V [auth AT] | Histone | e6uz7AT1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| U [auth AS] | Histone | e6uz7AS1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| P [auth AN] | Histone | e6uz7AN1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
| L [auth AI] | Histone | e6uz7AI1 | A: alpha bundles | X: P-loop domains-like | H: Helical bundle in flu nucleocapsid protein | T: Helical bundle in flu nucleocapsid protein | F: Histone | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth AA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| G [auth AD] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| G [auth AD] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| H [auth AE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| I [auth AF] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| J [auth AG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| K [auth AH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| M [auth AJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| M [auth AJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| O [auth AM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| O [auth AM] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| Q [auth AO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| R [auth AP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| T [auth AR] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| T [auth AR] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| W [auth AU] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| Z [auth AX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| AA [auth AY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| AA [auth AY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| BA [auth AZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| VA [auth A] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| VA [auth A] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
| WA [auth B] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| XA [auth C] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| XA [auth C] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| XA [auth C] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| YA [auth D] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| YA [auth D] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| YA [auth D] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| ZA [auth E] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| ZA [auth E] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| ZA [auth E] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| ZA [auth E] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| ZA [auth E] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| BB [auth G] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| BB [auth G] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| CB [auth H] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| DB [auth I] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| EB [auth J] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| EB [auth J] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| GB [auth L] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| GB [auth L] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| HB [auth M] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| JB [auth O] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| LB [auth Q] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| NB [auth S] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| OB [auth T] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| PB [auth U] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| QB [auth V] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| TB [auth Y] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| DC [auth 1] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| DC [auth 1] | PF11987 | Translation-initiation factor 2 (IF-2) | Translation-initiation factor 2 | IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ... | Domain |
| RB [auth W] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| KB [auth P] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| IB [auth N] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| F [auth AC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| F [auth AC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| FB [auth K] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| AB [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| AB [auth F] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| X [auth AV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| P [auth AN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| L [auth AI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain |














