Neck of empty GTA particle computed with C6 symmetry
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G | UNK_F_TYPE | e6toaG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Phage tail proteins | F: UNK_F_TYPE | ECOD (1.6) |
| F [auth E] | Phage_H_T_join | e6toaE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Phage tail proteins | F: Phage_H_T_join | ECOD (1.6) |
| E [auth F] | DUF3168 | e6toaF1 | A: a+b two layers | X: Alpha-beta plaits | H: Phage tail protein-like (From Topology) | T: Phage tail protein-like | F: DUF3168 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth E] | 2.40.10.270 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Bacteriophage SPP1 head-tail adaptor protein | CATH (utative) |
| E [auth F] | 3.30.2000.30 | Alpha Beta | 2-Layer Sandwich | STM4215-like | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF06199 | Phage tail tube protein (Phage_tail_2) | Phage tail tube protein | - | Family | |
| E [auth F] | PF11367 | Tail completion protein gp17 (Tail_completion_gp17) | Tail completion protein gp17 | This entry includes Tail completion protein gp17 from Siphoviridae bacteriophage SPP1 Swiss:O48448, a tail completion protein which caps the tail and interacts with the connector gp16, thereby attaching the tail to the capsid [1,2]. | Domain |
| B [auth A], C [auth B] | PF04860 | Phage portal protein (Phage_portal) | Phage portal protein | - | Family |
