6TOA | pdb_00006toa

Neck of empty GTA particle computed with C6 symmetry


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GUNK_F_TYPEe6toaG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: UNK_F_TYPEECOD (1.6)
F [auth E]Phage_H_T_joine6toaE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_H_T_joinECOD (1.6)
E [auth F]DUF3168e6toaF1 A: a+b two layersX: Alpha-beta plaitsH: Phage tail protein-like (From Topology)T: Phage tail protein-likeF: DUF3168ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth E]2.40.10.270 Mainly Beta Beta Barrel Thrombin, subunit H Bacteriophage SPP1 head-tail adaptor proteinCATH (utative)
E [auth F]3.30.2000.30 Alpha Beta 2-Layer Sandwich STM4215-like CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06199Phage tail tube protein (Phage_tail_2)Phage tail tube protein- Family
F [auth E]PF05521Phage head completion protein (Phage_HCP)Phage head completion proteinThis entry represents the head completion protein (gp16) found in Siphoviridae bacteriophages. This protein functions as a stopper in the portal-tail connector complex, locking the viral DNA inside the capsid. During infection, it undergoes a conform ...This entry represents the head completion protein (gp16) found in Siphoviridae bacteriophages. This protein functions as a stopper in the portal-tail connector complex, locking the viral DNA inside the capsid. During infection, it undergoes a conformational change, opening by a diaphragm-like motion to allow the genome to exit the capsid through the tail tube to the host cell. The protein also functions as a docking platform for the preassembled tail. The connector complex is essential for stable viral particle assembly and controlled genome release during host infection.
Domain
E [auth F]PF11367Tail completion protein gp17 (Tail_completion_gp17)Tail completion protein gp17This entry includes Tail completion protein gp17 from Siphoviridae bacteriophage SPP1 Swiss:O48448, a tail completion protein which caps the tail and interacts with the connector gp16, thereby attaching the tail to the capsid [1,2]. Domain
B [auth A],
C [auth B]
PF04860Phage portal protein (Phage_portal)Phage portal protein- Family