6TOA | pdb_00006toa

Neck of empty GTA particle computed with C6 symmetry

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GOxidored_q2e6toaG1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Oxidored_q2ECOD (develop294)
F [auth E]Oxidored_q2e6toaE1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Oxidored_q2ECOD (develop294)
E [auth F]Oxidored_q2e6toaF1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Oxidored_q2ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth E]2.40.10.270 Mainly Beta Beta Barrel Thrombin, subunit H Bacteriophage SPP1 head-tail adaptor proteinCATH (utative)
E [auth F]3.30.2000.30 Alpha Beta 2-Layer Sandwich STM4215-like CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06199Phage tail tube protein (Phage_tail_2)Phage tail tube protein- Family
E [auth F]PF11367Tail completion protein gp17 (Tail_completion_gp17)Tail completion protein gp17This entry includes Tail completion protein gp17 from Siphoviridae bacteriophage SPP1 Swiss:O48448, a tail completion protein which caps the tail and interacts with the connector gp16, thereby attaching the tail to the capsid [1,2]. Domain
B [auth A],
C [auth B]		PF04860Phage portal protein (Phage_portal)Phage portal protein- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011855Phage major tail protein TP901-1Family
IPR022344Gene transfer agent, major tail proteinFamily
F [auth E]IPR008767Bacteriophage SPP1, head-tail adaptorFamily
F [auth E]IPR038666Bacteriophage SPP1, head-tail adaptor superfamilyHomologous Superfamily
E [auth F]IPR053745Viral Tail Completion SuperfamilyHomologous Superfamily
E [auth F]IPR021508Tail completion protein gp17Family
B [auth A],
C [auth B]		IPR006427Phage portal protein, HK97Family
B [auth A],
C [auth B]		IPR006944Bacteriophage/Gene transfer agent portal proteinFamily
A [auth C],
D		IPR011738Phage conserved hypothetical proteinFamily