6TCD | pdb_00006tcd

Crystal structure of Salmo salar RidA-2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6tcdf_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
E	d6tcde1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
E	d6tcde2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
D	d6tcdd1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
D	d6tcdd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
C	d6tcdc1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
C	d6tcdc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
B	d6tcdb1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
B	d6tcdb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
A	d6tcda_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
D	SCOP2 Family	YjgF/L-PSP	8097353	4001510	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	YjgF-like	8097354	3001733	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Oxidored_q2	e6tcdF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Oxidored_q2	ECOD (v294.1)
E	Oxidored_q2	e6tcdE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Oxidored_q2	ECOD (v294.1)
D	CSD	e6tcdD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: CSD	ECOD (v294.1)
C	Oxidored_q2	e6tcdC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Oxidored_q2	ECOD (v294.1)
B	Oxidored_q2	e6tcdB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Oxidored_q2	ECOD (v294.1)
A	Oxidored_q2	e6tcdA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Oxidored_q2	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Ribonuclease UK114	hydrolase activity deaminase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006056	RidA family	Family
A, B, C, D, E A, B, C, D, E, F	IPR035959	RutC-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR006175	YjgF/YER057c/UK114 family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.