Annotations: 6TCD

Crystal structure of Salmo salar RidA-2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6tcdf_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
E	d6tcde1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
E	d6tcde2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
D	d6tcdd1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
D	d6tcdd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
C	d6tcdc1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
C	d6tcdc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
B	d6tcdb1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
B	d6tcdb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)
A	d6tcda_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	YjgF/L-PSP	automated matches	Atlantic salmon (Salmo salar ) [TaxId: 8030 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
D	SCOP2 Family	YjgF/L-PSP	8097353	4001510	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	YjgF-like	8097354	3001733	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YjgF-like	8097354	3001733	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e6tcdF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
E		e6tcdE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
D	CSD	e6tcdD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: CSD	ECOD (v295.2)
C		e6tcdC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
B		e6tcdB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
A		e6tcdA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Ribonuclease UK114	hydrolase activity deaminase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006056	RidA family	Family
A, B, C, D, E A, B, C, D, E, F	IPR035959	RutC-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR006175	YjgF/YER057c/UK114 family	Family

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