6RJH | pdb_00006rjh

3D structure of horse spleen apoferritin determined using multifunctional graphene supports for electron cryomicroscopy


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Xd6rjhx_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Wd6rjhw_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Vd6rjhv_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Ud6rjhu_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Td6rjht_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Sd6rjhs_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Rd6rjhr_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Qd6rjhq_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Pd6rjhp_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Od6rjho_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Nd6rjhn_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Md6rjhm_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Ld6rjhl_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Kd6rjhk_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Jd6rjhj_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Id6rjhi_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Hd6rjhh_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Gd6rjhg_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Fd6rjhf_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Ed6rjhe_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Dd6rjhd_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Cd6rjhc_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Bd6rjhb_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)
Ad6rjha_ All alpha proteins Ferritin-like Ferritin-like Ferritin (Apo)ferritin (Equus caballus ) [TaxId: 9796 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
XSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
USCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFerritin-like 8037855 3001658 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
XSigma70_r2,Sigma70_nere6rjhX1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
WSigma70_r2,Sigma70_nere6rjhW1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
VSigma70_r2,Sigma70_nere6rjhV1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
USigma70_r2,Sigma70_nere6rjhU1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
TSigma70_r2,Sigma70_nere6rjhT1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
SSigma70_r2,Sigma70_nere6rjhS1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
RSigma70_r2,Sigma70_nere6rjhR1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
QSigma70_r2,Sigma70_nere6rjhQ1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
PSigma70_r2,Sigma70_nere6rjhP1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
OSigma70_r2,Sigma70_nere6rjhO1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
NSigma70_r2,Sigma70_nere6rjhN1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
MSigma70_r2,Sigma70_nere6rjhM1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
LSigma70_r2,Sigma70_nere6rjhL1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
KSigma70_r2,Sigma70_nere6rjhK1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
JSigma70_r2,Sigma70_nere6rjhJ1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
ISigma70_r2,Sigma70_nere6rjhI1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
HSigma70_r2,Sigma70_nere6rjhH1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
GSigma70_r2,Sigma70_nere6rjhG1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
FSigma70_r2,Sigma70_nere6rjhF1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
ESigma70_r2,Sigma70_nere6rjhE1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
DSigma70_r2,Sigma70_nere6rjhD1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
CSigma70_r2,Sigma70_nere6rjhC1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
BSigma70_r2,Sigma70_nere6rjhB1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma70_r2,Sigma70_nerECOD (develop294)
Ae6rjhA1 A: alpha bundlesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF:ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
X1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
W1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
V1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
U1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
T1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
S1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
R1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
Q1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
P1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
O1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
N1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
M1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
L1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
K1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
J1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
I1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
H1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
G1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
F1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
E1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
D1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
C1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
B1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)
A1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00210Ferritin-like domain (Ferritin)Ferritin-like domainThis family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ferritin light chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR009040Ferritin-like diiron domainDomain
A, B, C, D, E
IPR012347Ferritin-likeHomologous Superfamily
A, B, C, D, E
IPR009078Ferritin-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR008331Ferritin/DPS domainDomain
A, B, C, D, E
IPR001519FerritinFamily
A, B, C, D, E
IPR014034Ferritin, conserved siteConserved Site