6RJH | pdb_00006rjh

3D structure of horse spleen apoferritin determined using multifunctional graphene supports for electron cryomicroscopy

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X	d6rjhx_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
W	d6rjhw_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
V	d6rjhv_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
U	d6rjhu_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
T	d6rjht_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
S	d6rjhs_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
R	d6rjhr_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
Q	d6rjhq_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
P	d6rjhp_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
O	d6rjho_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
N	d6rjhn_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
M	d6rjhm_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
L	d6rjhl_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
K	d6rjhk_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
J	d6rjhj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
I	d6rjhi_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
H	d6rjhh_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
G	d6rjhg_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
F	d6rjhf_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
E	d6rjhe_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
D	d6rjhd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
C	d6rjhc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
B	d6rjhb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)
A	d6rjha_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Equus caballus ) [TaxId: 9796 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8037855	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	Ferritin	e6rjhX1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
W	Ferritin	e6rjhW1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
V	Ferritin	e6rjhV1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
U	Ferritin	e6rjhU1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
T	Ferritin	e6rjhT1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
S	Ferritin	e6rjhS1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
R	Ferritin	e6rjhR1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
Q	Ferritin	e6rjhQ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
P	Ferritin	e6rjhP1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
O	Ferritin	e6rjhO1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
N	Ferritin	e6rjhN1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
M	Ferritin	e6rjhM1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
L	Ferritin	e6rjhL1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
K	Ferritin	e6rjhK1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
J	Ferritin	e6rjhJ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
I	Ferritin	e6rjhI1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
H	Ferritin	e6rjhH1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
G	Ferritin	e6rjhG1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
F	Ferritin	e6rjhF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
E	Ferritin	e6rjhE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
D	Ferritin	e6rjhD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
C	Ferritin	e6rjhC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
B	Ferritin	e6rjhB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)
A	Ferritin	e6rjhA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
W	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Ferritin light chain	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuole autophagosome autolysosome lytic vacuole membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle vacuole autophagosome autolysosome lytic vacuole secondary lysosome lysosome ferritin complex protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR001519	Ferritin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR014034	Ferritin, conserved site	Conserved Site