6R76 | pdb_00006r76

Crystal structure of trans-3-Hydroxy-L-proline dehydratase from Thermococcus litoralis - open conformation

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd6r76d_ Alpha and beta proteins (a+b) Diaminopimelate epimerase-like Diaminopimelate epimerase-like automated matches automated matches (Thermococcus litoralis DSM 5473 ) [TaxId: 523849 ], SCOPe (2.08)
Bd6r76b_ Alpha and beta proteins (a+b) Diaminopimelate epimerase-like Diaminopimelate epimerase-like automated matches automated matches (Thermococcus litoralis DSM 5473 ) [TaxId: 523849 ], SCOPe (2.08)
Cd6r76c_ Alpha and beta proteins (a+b) Diaminopimelate epimerase-like Diaminopimelate epimerase-like automated matches automated matches (Thermococcus litoralis DSM 5473 ) [TaxId: 523849 ], SCOPe (2.08)
Ad6r76a_ Alpha and beta proteins (a+b) Diaminopimelate epimerase-like Diaminopimelate epimerase-like automated matches automated matches (Thermococcus litoralis DSM 5473 ) [TaxId: 523849 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyDiaminopimelate epimerase-like 8097874 3000573 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDiaminopimelate epimerase-like 8097874 3000573 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDiaminopimelate epimerase-like 8097874 3000573 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDiaminopimelate epimerase-like 8097874 3000573 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPro_racemasee6r76D1 A: a+b complex topologyX: Diaminopimelate epimerase-like (From Topology)H: Diaminopimelate epimerase-like (From Topology)T: Diaminopimelate epimerase-likeF: Pro_racemaseECOD (1.6)
BPro_racemasee6r76B1 A: a+b complex topologyX: Diaminopimelate epimerase-like (From Topology)H: Diaminopimelate epimerase-like (From Topology)T: Diaminopimelate epimerase-likeF: Pro_racemaseECOD (1.6)
CPro_racemasee6r76C1 A: a+b complex topologyX: Diaminopimelate epimerase-like (From Topology)H: Diaminopimelate epimerase-like (From Topology)T: Diaminopimelate epimerase-likeF: Pro_racemaseECOD (1.6)
APro_racemasee6r76A2 A: a+b complex topologyX: Diaminopimelate epimerase-like (From Topology)H: Diaminopimelate epimerase-like (From Topology)T: Diaminopimelate epimerase-likeF: Pro_racemaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase Chain A, domain 1CATH (utative)
B3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase Chain A, domain 1CATH (utative)
C3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase Chain A, domain 1CATH (utative)
A3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase Chain A, domain 1CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
Proline racemase - -
A, C
Proline racemase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D
IPR008794Proline racemase familyFamily
A, C
IPR008794Proline racemase familyFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B, D
PHD Parent Component: ASP

RESID:  AA0033

PSI-MOD :  L-aspartic 4-phosphoric anhydride MOD:00042