6R2S
The structure of Plasmodium vivax Duffy binding protein (PvDBP) bound to human antibody DB9
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d6r2sc1 | All alpha proteins | Duffy binding domain-like | Duffy binding domain-like | Duffy binding domain | automated matches | (Plasmodium vivax Sal-1 ) [TaxId: 126793 ], | SCOPe (2.08) |
C | d6r2sc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Plasmodium vivax Sal-1 ) [TaxId: 126793 ], | SCOPe (2.08) |
A | d6r2sa2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d6r2sa1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Duffy binding domain-like | 8078551 | 3001914 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Duffy_binding | e6r2sC2 | A: alpha bundles | X: Duffy-binding-like domain, N-terminal subdomain (From Topology) | H: Duffy-binding-like domain, N-terminal subdomain (From Topology) | T: Duffy-binding-like domain, N-terminal subdomain | F: Duffy_binding | ECOD (1.6) |
C | PTZ00176 | e6r2sC1 | A: alpha bundles | X: Duffy-binding-like domain, C-terminal subdomain (From Topology) | H: Duffy-binding-like domain, C-terminal subdomain (From Topology) | T: Duffy-binding-like domain, C-terminal subdomain | F: PTZ00176 | ECOD (1.6) |
A | C1-set_4 | e6r2sA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
A | V-set | e6r2sA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B | V-set_8 | e6r2sB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B | C1-set_1 | e6r2sB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 1.20.1310.20 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Duffy-antigen binding domain | CATH (utative) |
C | 1.20.58.830 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Fab DB9 | L-KAPPA | Homo sapiens (human) | IGKV1-5*03, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202415-0) | |
Fab DB9 | VH-CH1 | Homo sapiens (human) | IGHV4-39*01, IGHV4-39*06, IGHV4-39*07, IGHJ2*01, IGHG1*03, IGHG1*08, IGHG1*06 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202415-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Light Chain | IGKV1 | Kappa | duffy receptor | SAbDab (2024-04-19) | |
Heavy Chain | IGHV4 | - | duffy receptor | SAbDab (2024-04-19) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05424 | Duffy binding domain (Duffy_binding) | Duffy binding domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Duffy receptor | - | |||
Antibody DB9 light chain | - | - | - | |
Antibody DB9 heavy chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043057 | Erythrocyte binding antigen 175, C-terminal domain superfamily | Homologous Superfamily | |
IPR008602 | Duffy-antigen binding domain | Domain | |
IPR021620 | Erythrocyte binding antigen 175, C-terminal | Domain | |
IPR021015 | Duffy-antigen binding, C-terminal | Domain | |
IPR042202 | Duffy-antigen binding superfamily | Homologous Superfamily | |
IPR021032 | Duffy-antigen binding, N-terminal | Domain |