6PJ6
High resolution cryo-EM structure of E.coli 50S
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth R] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
K [auth S] | SCOP2 Family | Ribosomal protein L14 | 8097617 | 4001826 | SCOP2 (2022-06-29) |
K [auth S] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8097618 | 3000433 | SCOP2 (2022-06-29) |
K [auth S] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
L [auth T] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
M [auth U] | SCOP2 Family | Ribosomal protein L16p | 8097605 | 4003717 | SCOP2 (2022-06-29) |
M [auth U] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8097606 | 3000884 | SCOP2 (2022-06-29) |
M [auth U] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
N [auth V] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
O [auth W] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
P [auth X] | SCOP2 Family | Ribosomal protein L19 | 8093579 | 4001761 | SCOP2 (2022-06-29) |
P [auth X] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8093580 | 3000334 | SCOP2 (2022-06-29) |
P [auth X] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
Q [auth Y] | SCOP2 Family | Ribosomal protein L20 | 8100905 | 4001930 | SCOP2 (2022-06-29) |
Q [auth Y] | SCOP2 Superfamily | Ribosomal protein L20 | 8100906 | 3000563 | SCOP2 (2022-06-29) |
Q [auth Y] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
R [auth Z] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
S [auth a] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
T [auth b] | SCOP2 Family | L23p | 8093577 | 4000943 | SCOP2 (2022-06-29) |
T [auth b] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8093578 | 3000210 | SCOP2 (2022-06-29) |
T [auth b] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
U [auth c] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8100851 | 4001752 | SCOP2 (2022-06-29) |
U [auth c] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8100852 | 3000334 | SCOP2 (2022-06-29) |
U [auth c] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
V [auth d] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
W [auth e] | SCOP2 Family | Ribosomal L27 protein | 8093423 | 4001900 | SCOP2 (2022-06-29) |
W [auth e] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8093424 | 3000539 | SCOP2 (2022-06-29) |
W [auth e] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
X [auth f] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
Y [auth g] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
Z [auth h] | SCOP2 Family | Ribosomal protein L30p/L7e | 8098027 | 4001360 | SCOP2 (2022-06-29) |
Z [auth h] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8098028 | 3001378 | SCOP2 (2022-06-29) |
Z [auth h] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
AA [auth i] | SCOP2 Family | Ribosomal protein L32p | 8093691 | 4000508 | SCOP2 (2022-06-29) |
AA [auth i] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8093692 | 3001320 | SCOP2 (2022-06-29) |
AA [auth i] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
BA [auth j] | SCOP2 Family | Ribosomal protein L33p | 8093457 | 4000511 | SCOP2 (2022-06-29) |
BA [auth j] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8093458 | 3001320 | SCOP2 (2022-06-29) |
BA [auth j] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
C [auth K] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
C [auth K] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
DA [auth l] | SCOP2 Family | Ribosomal protein L35p | 8093589 | 4003406 | SCOP2 (2022-06-29) |
DA [auth l] | SCOP2 Superfamily | L35p-like | 8093590 | 3000790 | SCOP2 (2022-06-29) |
DA [auth l] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
EA [auth m] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
D [auth L] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
E [auth M] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2 Family | Ribosomal protein L5 | 8097879 | 4001498 | SCOP2 (2022-06-29) |
F [auth N] | SCOP2 Superfamily | RL5-like | 8097880 | 3001709 | SCOP2 (2022-06-29) |
F [auth N] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
G [auth O] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
G [auth O] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
H [auth P] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
H [auth P] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
I [auth Q] | SCOP2B Superfamily | Ribosomal protein L11 C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
I [auth Q] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth R] | PF00572 | e6pj6R1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
K [auth S] | PF00238 | e6pj6S1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
L [auth T] | PF00828 | e6pj6T1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
M [auth U] | PF00252 | e6pj6U1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
N [auth V] | PF01196 | e6pj6V1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
O [auth W] | PF00861 | e6pj6W1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
P [auth X] | PF01245 | e6pj6X1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
Q [auth Y] | PF00453 | e6pj6Y1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
R [auth Z] | PF00829 | e6pj6Z1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
S [auth a] | PF00237 | e6pj6a1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
T [auth b] | PF00276 | e6pj6b1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
U [auth c] | PF00467,PF17136 | e6pj6c1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
V [auth d] | PF01386 | e6pj6d1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
W [auth e] | PF01016 | e6pj6e1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
X [auth f] | PF00830 | e6pj6f1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
Y [auth g] | PF00831 | e6pj6g1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
Z [auth h] | PF00327 | e6pj6h1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
AA [auth i] | PF01783 | e6pj6i1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
BA [auth j] | PF00471 | e6pj6j1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
CA [auth k] | PF00468 | e6pj6k1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
C [auth K] | PF00181 | e6pj6K2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
C [auth K] | PF03947 | e6pj6K1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
DA [auth l] | PF01632 | e6pj6l1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
EA [auth m] | PF00444 | e6pj6m1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
D [auth L] | PF00297 | e6pj6L1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
E [auth M] | PF00573 | e6pj6M1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
F [auth N] | PF00281,PF00673 | e6pj6N1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
G [auth O] | PF00347 | e6pj6O2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
H [auth P] | PF01281 | e6pj6P1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
H [auth P] | PF03948 | e6pj6P2 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF03948 | ECOD (1.6) |
I [auth Q] | PF00298 | e6pj6Q1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
I [auth Q] | PF03946 | e6pj6Q2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |