6O81

Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to translation initiation factor 2 from Homo sapiens


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth L]SCOP2B SuperfamilyeIF2alpha middle domain-like8042150 3001761 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins8042151 3000135 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyNucleic acid-binding proteins8042151 3000135 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyeIF2alpha middle domain-like8042150 3001761 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyNagB/RpiA/CoA transferase-like8101599 3000693 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNagB/RpiA/CoA transferase-like8101599 3000693 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe6o81A3 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: F_UNCLASSIFIEDECOD (1.6)
APF02020e6o81A2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF02020ECOD (1.6)
AF_UNCLASSIFIEDe6o81A1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe6o81B3 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: F_UNCLASSIFIEDECOD (1.6)
BPF02020e6o81B2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF02020ECOD (1.6)
BF_UNCLASSIFIEDe6o81B1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: F_UNCLASSIFIEDECOD (1.6)
EPF01008e6o81E2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: PF01008ECOD (1.6)
EPF01008e6o81E1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF01008ECOD (1.6)
FPF01008e6o81F1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: PF01008ECOD (1.6)
FPF01008e6o81F2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF01008ECOD (1.6)
IPF00483e6o81I1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: PF00483ECOD (1.6)
JPF00483e6o81J1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: PF00483ECOD (1.6)
K [auth L]PF00575e6o81L1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00575ECOD (1.6)
K [auth L]PF07541e6o81L3 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: PF07541ECOD (1.6)
K [auth L]PF07541e6o81L2 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: PF07541ECOD (1.6)
L [auth M]PF00575e6o81M2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00575ECOD (1.6)
L [auth M]PF07541e6o81M3 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: PF07541ECOD (1.6)
L [auth M]PF07541e6o81M1 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: PF07541ECOD (1.6)
M [auth S]PF03144e6o81S2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
M [auth S]PF09173e6o81S1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: PF09173ECOD (1.6)
M [auth S]PF00009e6o81S3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
N [auth T]PF03144e6o81T2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
N [auth T]PF09173e6o81T1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: PF09173ECOD (1.6)
N [auth T]PF00009e6o81T3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
CPF01008e6o81C1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: PF01008ECOD (1.6)
CPF01008e6o81C2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF01008ECOD (1.6)
DPF01008e6o81D1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: PF01008ECOD (1.6)
DPF01008e6o81D2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF01008ECOD (1.6)
GPF01008e6o81G2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: PF01008ECOD (1.6)
GPF01008e6o81G1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF01008ECOD (1.6)
HPF01008e6o81H1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: PF01008ECOD (1.6)
HPF01008e6o81H2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF01008ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02020eIF4-gamma/eIF5/eIF2-epsilon (W2)eIF4-gamma/eIF5/eIF2-epsilon- Repeat
E, F
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
K [auth L],
L [auth M]
PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
K [auth L],
L [auth M]
PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
M [auth S],
N [auth T]
PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
M [auth S],
N [auth T]
PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1].Domain
M [auth S],
N [auth T]
PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
C, D
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
G, H
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Translation initiation factor eIF-2B subunit epsilon
E, F
Translation initiation factor eIF-2B subunit delta
I, J
Translation initiation factor eIF-2B subunit gamma
K [auth L],
L [auth M]
Eukaryotic translation initiation factor 2 subunit 1
M [auth S],
N [auth T]
Eukaryotic translation initiation factor 2 subunit 3
C, D
Translation initiation factor eIF-2B subunit beta
G, H
Translation initiation factor eIF-2B subunit alpha
O [auth d],
P [auth e]
Translation initiation factor eiF2 beta-subunit---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR044123Translation initiation factor eIF-2B subunit epsilon, W2 domainDomain
A, B
IPR016024Armadillo-type foldHomologous Superfamily
A, B
IPR003307W2 domainDomain
A, B
IPR035543Translation initiation factor eIF-2B subunit epsilon, N-terminalDomain
A, B
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
A, B
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
E, F
IPR000649Initiation factor 2B-relatedFamily
E, F
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
E, F
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
I, J
IPR005835Nucleotidyl transferase domainDomain
I, J
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
K [auth L],
L [auth M]
IPR044126IF2a, S1-like domainDomain
K [auth L],
L [auth M]
IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
K [auth L],
L [auth M]
IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
K [auth L],
L [auth M]
IPR003029S1 domainDomain
K [auth L],
L [auth M]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth L],
L [auth M]
IPR011488Translation initiation factor 2, alpha subunitFamily
M [auth S],
N [auth T]
IPR000795Translational (tr)-type GTP-binding domainDomain
M [auth S],
N [auth T]
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
M [auth S],
N [auth T]
IPR004161Translation elongation factor EFTu-like, domain 2Domain
M [auth S],
N [auth T]
IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
M [auth S],
N [auth T]
IPR015256Initiation factor eIF2 gamma, C-terminalDomain
M [auth S],
N [auth T]
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
M [auth S],
N [auth T]
IPR044127Initiation factor eIF2 gamma, domain 2Domain
M [auth S],
N [auth T]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C, D
IPR000649Initiation factor 2B-relatedFamily
C, D
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
C, D
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
G, H
IPR000649Initiation factor 2B-relatedFamily
G, H
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
G, H
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
G, H
IPR042528Translation initiation factor eIF-2B subunit alpha, N-terminalHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosQ13144
E, F
PharosQ9UI10
I, J
PharosQ9NR50
K [auth L],
L [auth M]
PharosP05198
M [auth S],
N [auth T]
PharosP41091
C, D
PharosP49770
G, H
PharosQ14232