6NHV | pdb_00006nhv

Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth X]	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
C [auth O]	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
B [auth N]	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth T]	Arf, G-alpha	e6nhvT1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)
E [auth S]	Arf, G-alpha	e6nhvS1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)
D [auth R]	Arf, G-alpha	e6nhvR1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)
G [auth X]	Arf, G-alpha	e6nhvX1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)
C [auth O]	Arf, G-alpha	e6nhvO1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)
B [auth N]	Arf, G-alpha	e6nhvN1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)
A	Arf, G-alpha	e6nhvA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth T]	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (utative)
E [auth S]	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (utative)
G [auth X]	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (utative)
C [auth O]	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (utative)
B [auth N]	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth N], C [auth O], G [auth X]	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI)	5-carboxymethyl-2-hydroxymuconate isomerase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth R], E [auth S], F [auth T]	Subunit A-DARPin	-	-	-
B [auth N], C [auth O], G [auth X]	DARP14 - Subunit B	isomerase activity intramolecular oxidoreductase activity, transposing C=C bonds intramolecular oxidoreductase activity 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity catalytic activity	-	-
A	superfolder GFP	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth N], C [auth O], G [auth X]	IPR014347	Tautomerase/MIF superfamily	Homologous Superfamily
B [auth N], C [auth O], G [auth X]	IPR004220	5-carboxymethyl-2-hydroxymuconate isomerase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.