6JO5 | pdb_00006jo5

Structure of the green algal photosystem I supercomplex with light-harvesting complex I


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
I [auth J]d6jo5j_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Fd6jo5f_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ed6jo5e_ All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Dd6jo5d_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Cd6jo5c_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin Photosystem I iron-sulfur protein PsaC Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
U [auth 9]d6jo59_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Bd6jo5b_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
R [auth 5]d6jo55_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Q [auth 4]d6jo54_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
O [auth 8]d6jo58_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
N [auth 7]d6jo57_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
M [auth 3]d6jo53_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
P [auth Z]d6jo5z_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
L [auth 1]d6jo51_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
K [auth L]d6jo5l_ Membrane and cell surface proteins and peptides Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL automated matches automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ad6jo5a_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches Chlamydomonas smithii (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094723 3000824 SCOP2B (2022-06-29)
FSCOP2 FamilySubunit III of photosystem I reaction centre, PsaF 8094179 4002091 SCOP2 (2022-06-29)
FSCOP2 SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094180 3000813 SCOP2 (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8094773 3000325 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8095071 3000951 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8093860 3000020 SCOP2B (2022-06-29)
U [auth 9]SCOP2B SuperfamilyChlorophyll a-b binding protein 8097194 3000343 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094499 3000850 SCOP2B (2022-06-29)
S [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099928 3000343 SCOP2B (2022-06-29)
R [auth 5]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099932 3000343 SCOP2B (2022-06-29)
Q [auth 4]SCOP2 FamilyChlorophyll a-b binding protein 8099933 4001763 SCOP2 (2022-06-29)
Q [auth 4]SCOP2 SuperfamilyChlorophyll a-b binding protein 8099934 3000343 SCOP2 (2022-06-29)
O [auth 8]SCOP2 FamilyChlorophyll a-b binding protein 8099929 4001763 SCOP2 (2022-06-29)
O [auth 8]SCOP2 SuperfamilyChlorophyll a-b binding protein 8099930 3000343 SCOP2 (2022-06-29)
N [auth 7]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100068 3000343 SCOP2B (2022-06-29)
P [auth Z]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
L [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8097190 3000870 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094461 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth J]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5J1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
H [auth I]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5I1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
GANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5G1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
FANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5F1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
EANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5E1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
DANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5D1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
CANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5C1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
U [auth 9]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo591 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
BANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5B1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
T [auth 2]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo521 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
S [auth 6]AAA_lid_3e6jo561 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: AAA_lid_3ECOD (develop294)
R [auth 5]AAA_lid_3e6jo551 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: AAA_lid_3ECOD (develop294)
Q [auth 4]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo541 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
O [auth 8]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo581 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
N [auth 7]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo571 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
M [auth 3]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo531 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
P [auth Z]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5Z1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
L [auth 1]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo511 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
K [auth L]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5L1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
J [auth K]ANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5K1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)
AANAPC4_WD40, Beta-prop_WDR36-Utp21_1ste6jo5A1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1stECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J]PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
H [auth I]PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
U [auth 9]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
T [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
S [auth 6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
R [auth 5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth 8]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
N [auth 7]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
L [auth 1],
P [auth Z]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]Photosystem I reaction center subunit IX-
H [auth I]Photosystem I reaction center subunit VIII-
Photosystem I reaction center subunit V, chloroplastic-
Photosystem I reaction center subunit F, Photosystem I reaction center subunit III, chloroplastic-
Photosystem I reaction center subunit IV, chloroplastic-
Photosystem I reaction center subunit II, chloroplastic-
Photosystem I iron-sulfur center
U [auth 9]Chlorophyll a-b binding protein, chloroplastic
Photosystem I P700 chlorophyll a apoprotein A2
T [auth 2]Chlorophyll a-b binding protein, chloroplastic
S [auth 6]Chlorophyll a-b binding protein, chloroplastic
R [auth 5]Chlorophyll a-b binding protein, chloroplastic
Q [auth 4]Chlorophyll a-b binding protein, chloroplastic
O [auth 8]Chlorophyll a-b binding protein, chloroplastic
N [auth 7]Chlorophyll a-b binding protein, chloroplastic
M [auth 3]Chlorophyll a-b binding protein, chloroplastic---
L [auth 1],
P [auth Z]
Chlorophyll a-b binding protein, chloroplastic
K [auth L]Photosystem I reaction center subunit XI-
J [auth K]Photosystem I reaction center subunit psaK, chloroplastic-
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
I [auth J]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
H [auth I]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
H [auth I]IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
U [auth 9]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth 9]IPR022796Chlorophyll A-B binding proteinFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
T [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
T [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
S [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
S [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
R [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
R [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
Q [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
O [auth 8]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 8]IPR022796Chlorophyll A-B binding proteinFamily
N [auth 7]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 7]IPR022796Chlorophyll A-B binding proteinFamily
L [auth 1],
P [auth Z]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
L [auth 1],
P [auth Z]
IPR022796Chlorophyll A-B binding proteinFamily
K [auth L]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
K [auth L]IPR022980Photosystem I, reaction centre subunit XIFamily
K [auth L]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
J [auth K]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
J [auth K]IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
J [auth K]IPR000549Photosystem I reaction center subunit V/PsaKFamily
J [auth K]IPR017493Photosystem I reaction center subunit psaK, plantFamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site