6JC6 | pdb_00006jc6

Crystal structure of the purple chromoprotein of Stichodactyla haddoni with a Glu-Tyr-Gly tri-peptide chromophore

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6jc6h_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
G	d6jc6g_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
F	d6jc6f_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
E	d6jc6e_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
D	d6jc6d1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
D	d6jc6d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
C	d6jc6c1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
C	d6jc6c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
B	d6jc6b1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
B	d6jc6b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
A	d6jc6a1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
A	d6jc6a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2 Family	Fluorescent proteins	8094830	4001049	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	GFP-like	8094831	3000576	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	p450	e6jc6H1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
G	p450	e6jc6G1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
F	p450	e6jc6F1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
E	p450	e6jc6E1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
D	p450	e6jc6D1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
C	p450	e6jc6C1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
B	Phospholip_A2_1	e6jc6B1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Phospholip_A2_1	ECOD (v294.1)
A	p450	e6jc6A1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	shCP	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.