6JC6 | pdb_00006jc6

Crystal structure of the purple chromoprotein of Stichodactyla haddoni with a Glu-Tyr-Gly tri-peptide chromophore

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6jc6a1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
A	d6jc6a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
B	d6jc6b1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
B	d6jc6b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
C	d6jc6c1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
C	d6jc6c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
D	d6jc6d1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
D	d6jc6d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
E	d6jc6e_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
F	d6jc6f_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
G	d6jc6g_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
H	d6jc6h_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8094831	3000576	SCOP2B (2022-06-29)
H	SCOP2 Family	Fluorescent proteins	8094830	4001049	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	GFP-like	8094831	3000576	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GFP	e6jc6A1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
B	GFP	e6jc6B1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
C	GFP	e6jc6C1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
D	GFP	e6jc6D1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
E	GFP	e6jc6E1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
F	GFP	e6jc6F1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
G	GFP	e6jc6G1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
H	GFP	e6jc6H1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	shCP	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.