6J2P
Crystal structure of Saccharomyces cerevisiae Spp1 in complex with H3K4me3
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PHD_5 | e6j2pA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_5 | ECOD (1.6) |
A | UNK_F_TYPE | e6j2pA2 | A: few secondary structure elements | X: CCCH zinc finger | H: SSP1 C3H-type zinc finger (From Topology) | T: SSP1 C3H-type zinc finger | F: UNK_F_TYPE | ECOD (1.6) |
B | PHD_5 | e6j2pB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_5 | ECOD (1.6) |
B | UNK_F_TYPE | e6j2pB2 | A: few secondary structure elements | X: CCCH zinc finger | H: SSP1 C3H-type zinc finger (From Topology) | T: SSP1 C3H-type zinc finger | F: UNK_F_TYPE | ECOD (1.6) |
C | PHD_5 | e6j2pC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_5 | ECOD (1.6) |
C | UNK_F_TYPE | e6j2pC2 | A: few secondary structure elements | X: CCCH zinc finger | H: SSP1 C3H-type zinc finger (From Topology) | T: SSP1 C3H-type zinc finger | F: UNK_F_TYPE | ECOD (1.6) |
D | PHD_5 | e6j2pD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_5 | ECOD (1.6) |
D | UNK_F_TYPE | e6j2pD2 | A: few secondary structure elements | X: CCCH zinc finger | H: SSP1 C3H-type zinc finger (From Topology) | T: SSP1 C3H-type zinc finger | F: UNK_F_TYPE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain | |
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR000164 | Histone H3/CENP-A | Family | |
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR037869 | Spp1/CFP1 | Family | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site |