6IJF

Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF14113e6ijfC1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: PF14113ECOD (1.6)
DPF14113e6ijfD1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: PF14113ECOD (1.6)
APF18602e6ijfA1 A: alpha superhelicesX: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-likeH: Rap1a (From Topology)T: Rap1aF: PF18602ECOD (1.6)
BPF18602e6ijfB1 A: alpha superhelicesX: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-likeH: Rap1a (From Topology)T: Rap1aF: PF18602ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, D
PF14113Type VI secretion system (T6SS), amidase effector protein 4 (Tae4)Type VI secretion system (T6SS), amidase effector protein 4Tae4 is a new form of toxin-antitoxin system protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the rec ...Tae4 is a new form of toxin-antitoxin system protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein [1]. The immunity protein is Tai4, Pfam:PF16695.
Domain
A, B
PF18602Rap1a immunity proteins (Rap1a)Rap1a immunity proteinsThe structures of the immunity proteins, Rap1a , responsible for the inhibition and neutralization of Ssp1 endopeptidase, revealed two distinct folds. The structure of the Ssp1-Rap1a complex revealed a tightly bound heteromeric assembly with two effe ...The structures of the immunity proteins, Rap1a , responsible for the inhibition and neutralization of Ssp1 endopeptidase, revealed two distinct folds. The structure of the Ssp1-Rap1a complex revealed a tightly bound heteromeric assembly with two effector molecules flanking a Rap1a dimer. The Rap1a subunit displays a compact globular structure constructed from five alpha-helices that assemble to form the highly stable symmetric dimer [1].
Domain