6ICM
Pseudomonas putida CBB5 NdmA with ferredoxin domain of NdmD
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00355 | e6icmA2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: PF00355 | ECOD (1.6) |
A | PF19112 | e6icmA1 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: PF19112 | ECOD (1.6) |
B | PF00355 | e6icmB2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: PF00355 | ECOD (1.6) |
B | PF19112 | e6icmB1 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: PF19112 | ECOD (1.6) |
C | PF00355 | e6icmC2 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: PF00355 | ECOD (1.6) |
C | PF19112 | e6icmC1 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: PF19112 | ECOD (1.6) |
D | PF00111 | e6icmD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00111 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19112 | Vanillate O-demethylase oxygenase C-terminal domain (VanA_C) | Vanillate O-demethylase oxygenase C-terminal domain | This domain is found in a wide variety of oxygenases such as Vanillate O-demethylase oxygenase and Toluene-4-sulfonate monooxygenase. | Domain | |
PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain | |
PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017941 | Rieske [2Fe-2S] iron-sulphur domain | Domain | |
IPR044043 | Vanillate O-demethylase oxygenase-like, C-terminal catalytic domain | Domain | |
IPR036922 | Rieske [2Fe-2S] iron-sulphur domain superfamily | Homologous Superfamily | |
IPR036922 | Rieske [2Fe-2S] iron-sulphur domain superfamily | Homologous Superfamily | |
IPR036010 | 2Fe-2S ferredoxin-like superfamily | Homologous Superfamily | |
IPR001041 | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Domain | |
IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site | Binding Site | |
IPR039261 | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Homologous Superfamily | |
IPR017938 | Riboflavin synthase-like beta-barrel | Homologous Superfamily | |
IPR017941 | Rieske [2Fe-2S] iron-sulphur domain | Domain | |
IPR017927 | FAD-binding domain, ferredoxin reductase-type | Domain | |
IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily |