Annotations: 6ICM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	2Fe-2S ferredoxin domains from multidomain proteins	8095758	4000241	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	2Fe-2S ferredoxin-like	8095759	3000113	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TSP_1	e6icmD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Ntn	T: Proteasome subunits	F: TSP_1	ECOD (v294.1)
C	Hydrolase	e6icmC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Hydrolase	ECOD (v294.1)
B	Hydrolase	e6icmB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Hydrolase	ECOD (v294.1)
A	Hydrolase	e6icmA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Hydrolase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Oxidoreductase NdmD	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	catabolic process alkaloid catabolic process metabolic process cellular process alkaloid metabolic process	-
A, B, C	Methylxanthine N1-demethylase NdmA	oxidoreductase activity catalytic activity demethylase activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	catabolic process alkaloid catabolic process metabolic process cellular process alkaloid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
D	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
D	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
D	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
D	IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Homologous Superfamily
D	IPR017938	Riboflavin synthase-like beta-barrel	Homologous Superfamily
D	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
D	IPR017927	FAD-binding domain, ferredoxin reductase-type	Domain
D	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
D	IPR050415	Multicomponent Reductase Electron Transfer	Family
A, B, C	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
A, B, C	IPR044043	Vanillate O-demethylase oxygenase-like, C-terminal catalytic domain	Domain
A, B, C	IPR050584	Cholesterol 7-desaturase	Family
A, B, C	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.