Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00603e6f5pA1 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
APF00603e6f5pA2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
B [auth D]PF00603e6f5pD2 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
B [auth D]PF00603e6f5pD1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
C [auth B]PF00602e6f5pB2 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
C [auth B]PF00602e6f5pB1 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
C [auth B]PF00602e6f5pB3 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
D [auth C]PF00602e6f5pC2 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
D [auth C]PF00602e6f5pC1 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
D [auth C]PF00602e6f5pC3 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
EPF00604,PF20951e6f5pE1 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
EPF20950e6f5pE2 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
EPF20952e6f5pE5 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
EPF20948e6f5pE4 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
EPF00604e6f5pE6 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
EPF20949e6f5pE3 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
EPF20947e6f5pE7 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)
FPF00604,PF20951e6f5pF6 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
FPF20950e6f5pF7 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
FPF20952e6f5pF3 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
FPF20948e6f5pF5 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
FPF00604e6f5pF1 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
FPF20949e6f5pF4 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
FPF20947e6f5pF2 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B [auth D]
PF00603Influenza RNA-dependent RNA polymerase subunit PA (Flu_PA)Influenza RNA-dependent RNA polymerase subunit PA- Family
C [auth B],
D [auth C]
PF00602Influenza RNA-dependent RNA polymerase subunit PB1 (Flu_PB1)Influenza RNA-dependent RNA polymerase subunit PB1- Family
E, F
PF00604Influenza RNA polymerase PB2 CAP binding domain (Flu_PB2_5th)Influenza RNA polymerase PB2 CAP binding domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the CAP binding domain [2].
Domain
E, F
PF20948Influenza RNA polymerase PB2 second domain (Flu_PB2_2nd)Influenza RNA polymerase PB2 second domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the domain of the Flu PB protein that follows the N-terminal extended region.
Domain
E, F
PF20947Influenza RNA polymerase PB2 N-terminal region (Flu_PB2_1st)Influenza RNA polymerase PB2 N-terminal region- Family
E, F
PF20949Influenza RNA polymerase PB2 middle domain (Flu_PB2_3rd)Influenza RNA polymerase PB2 middle domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the middle domain in Flu PB2 protein.
Domain
E, F
PF20951Influenza RNA polymerase PB2 6th domain (Flu_PB2_6th)Influenza RNA polymerase PB2 6th domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the 6th domain of PB2.
Domain
E, F
PF20950Influenza RNA polymerase PB2 helical domain (Flu_PB2_4th)Influenza RNA polymerase PB2 helical domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the helical domain of Flu PB2 protein.
Domain
E, F
PF20952Influenza RNA polymerase PB2 C-terminal domain (Flu_PB2_7th)Influenza RNA polymerase PB2 C-terminal domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the C-terminal domain of Flu PB2 protein.
Domain
PF05001RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R)RNA polymerase Rpb1 C-terminal repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth D]
Polymerase acidic protein
C [auth B],
D [auth C]
RNA-directed RNA polymerase catalytic subunit
E, F
Polymerase basic protein 2
DNA-directed RNA polymerase subunit
ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B [auth D]
IPR001009Influenza RNA-dependent RNA polymerase subunit PAFamily
A,
B [auth D]
IPR037534Polymerase acidic proteinFamily
A,
B [auth D]
IPR038372Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domainHomologous Superfamily
C [auth B],
D [auth C]
IPR007099RNA-directed RNA polymerase, negative-strand RNA virusDomain
C [auth B],
D [auth C]
IPR001407Influenza RNA-dependent RNA polymerase subunit PB1Family
E, F
IPR001591Influenza RNA-dependent RNA polymerase subunit PB2Family
E, F
IPR049106Influenza RNA polymerase PB2, N-terminal regionDomain
E, F
IPR049115Influenza RNA polymerase PB2, C-terminal domainDomain
E, F
IPR049110Influenza RNA polymerase PB2, second domainDomain
E, F
IPR049114Influenza RNA polymerase PB2, sixth domainDomain
E, F
IPR049113Polymerase basic protein 2, helical domainDomain
E, F
IPR049111Influenza RNA polymerase PB2, middle domainDomain
E, F
IPR048298Influenza RNA polymerase PB2, CAP binding domainDomain
IPR007081RNA polymerase Rpb1, domain 5Domain
IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
IPR007075RNA polymerase Rpb1, domain 6Domain
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
IPR007083RNA polymerase Rpb1, domain 4Domain
IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
IPR006592RNA polymerase, N-terminalDomain
IPR007066RNA polymerase Rpb1, domain 3Domain
IPR007073RNA polymerase Rpb1, domain 7Domain
IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
IPR000722RNA polymerase, alpha subunitDomain
IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
IPR007080RNA polymerase Rpb1, domain 1Domain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046