6E6I

Crystal structure of 4-methyl HOPDA bound to LigY from Sphingobium sp. strain SYK-6

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6e6ia_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
B	d6e6ib_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
C	d6e6ic_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
D	d6e6id_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
E	d6e6ie_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
F	d6e6if_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
G	d6e6ig_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
H	d6e6ih_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
I	d6e6ii_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
F	SCOP2 Family	PP1699/LP2961-like	8086501	4002329	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF04909	e6e6iA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
B	PF04909	e6e6iB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
C	PF04909	e6e6iC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
D	PF04909	e6e6iD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
E	PF04909	e6e6iE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
F	PF04909	e6e6iF1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
G	PF04909	e6e6iG1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
H	PF04909	e6e6iH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)
I	PF04909	e6e6iI1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04909	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I	PF04909	Amidohydrolase (Amidohydro_2)	Amidohydrolase	These proteins are amidohydrolases that are related to Pfam:PF01979 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase	hydrolase activity catalytic activity carboxy-lyase activity lyase activity carbon-carbon lyase activity	organic substance metabolic process metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR032465	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR006680	Amidohydrolase-related	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR032466	Metal-dependent hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.