6E6I | pdb_00006e6i

Crystal structure of 4-methyl HOPDA bound to LigY from Sphingobium sp. strain SYK-6

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6e6ia_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
D	d6e6id_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
H	d6e6ih_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
I	d6e6ii_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
G	d6e6ig_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
F	d6e6if_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
E	d6e6ie_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
C	d6e6ic_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)
B	d6e6ib_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	(Sphingobium sp. SYK-6 ) [TaxId: 627192 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2 Family	PP1699/LP2961-like	8086501	4002329	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Metallo-dependent hydrolases	8086502	3000428	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MACPF	e6e6iA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
D	MACPF	e6e6iD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
H	MACPF	e6e6iH1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
I	MACPF	e6e6iI1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
G	MACPF	e6e6iG1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
F	MACPF	e6e6iF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
E	MACPF	e6e6iE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
C	MACPF	e6e6iC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)
B	MACPF	e6e6iB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MACPF	ECOD (v294.1)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.