Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth E]SCOP2B SuperfamilyvWA-like8082334 3000832 SCOP2B (2022-06-29)
D [auth B]SCOP2 FamilyPicornaviridae-like VP (VP1 VP2 VP3 and VP4)8068057 4003466 SCOP2 (2022-06-29)
D [auth B]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like8068058 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth E]PF00092e6cx1E1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: PF00092ECOD (1.6)
B [auth A]PF22663e6cx1A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22663ECOD (1.6)
CPF00073e6cx1C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
D [auth B]PF00073e6cx1B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth E]3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
B [auth A]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D [auth B]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth E]PF00092von Willebrand factor type A domain (VWA)von Willebrand factor type A domain- Domain
A [auth E]PF05587Anthrax receptor extracellular domain (Anth_Ig)Anthrax receptor extracellular domainThis region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to Pfam:PF01833 (personal obs: C Yeats).Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
D [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth E]Anthrax toxin receptor 1
B [auth A]Capsid protein VP1
Capsid protein VP2
D [auth B]Capsid protein VP3
E [auth D]Capsid protein VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth E]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
A [auth E]IPR008400Anthrax toxin receptor, extracellular domainDomain
A [auth E]IPR008399Anthrax toxin receptor, C-terminalDomain
A [auth E]IPR002035von Willebrand factor, type ADomain
B [auth A]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth A]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth A]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth A]IPR001676Picornavirus capsidDomain
B [auth A]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth A]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth A]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
B [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth A]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth A]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth A]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth A]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth A]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
D [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth B]IPR001676Picornavirus capsidDomain
D [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth B]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
D [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth B]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
E [auth D]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth D]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth D]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth D]IPR001676Picornavirus capsidDomain
E [auth D]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth D]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth D]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth D]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
E [auth D]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth D]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth D]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth D]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
E [auth D]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth D]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth D]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily