6CN0
2.95 Angstrom Crystal Structure of 16S rRNA Methylase from Proteus mirabilis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Antibiotic resistance ribosomal RNA methyltransferase N-terminal domain-like | 8090796 | 4007714 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Antibiotic resistance ribosomal RNA methyltransferase C-terminal domain-like | 8086648 | 4006324 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | UBA-like | 8090797 | 3001235 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8090787 | 3000118 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8090787 | 3000118 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | UBA-like | 8090797 | 3001235 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8090787 | 3000118 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | UBA-like | 8090797 | 3001235 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8090787 | 3000118 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | UBA-like | 8090797 | 3001235 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e6cn0B1 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF07091 | e6cn0B2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF07091 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6cn0A2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF07091 | e6cn0A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF07091 | ECOD (1.6) |
C | F_UNCLASSIFIED | e6cn0C1 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF07091 | e6cn0C2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF07091 | ECOD (1.6) |
D | F_UNCLASSIFIED | e6cn0D2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF07091 | e6cn0D1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF07091 | ECOD (1.6) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3000861 | rmtC | RmtC is a rRNA methyltransferase found in Proteus mirabilis with high level resistance to similar to aminoglycosides, with the exception of non-4,6-disubstituted deoxystreptamines (streptomycin and neomycin). It has also been isolated in Salmonella enterica ser. Virchow. It is hypothesized to methylate G1405, like related methyltransferases RmtA, RmtB, and ArmA. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:3004271 | 16S rRNA methyltransferase (G1405) | aminoglycoside antibiotic | antibiotic target alteration | CARD (3.2.9) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
16S rRNA (guanine(1405)-N(7))-methyltransferase |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025981 | Ribosomal RNA aminoglycoside-resistance methyltransferase | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR010769 | Ribosomal RNA aminoglycoside-resistance methyltransferase, Gram-negative bacteria | Family |