6C4H

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth v]	PF00472	e6c4hv1	A: a+b two layers	X: dsRBD-like	H: Peptidyl-tRNA hydrolase domain-like (From Topology)	T: Peptidyl-tRNA hydrolase domain-like	F: PF00472	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth v]	3.30.160.20	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
C [auth D]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
D [auth N]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e	-	Domain
E [auth X]	PF01016	Ribosomal L27 protein (Ribosomal_L27)	Ribosomal L27 protein	-	Family
G [auth v]	PF00472	RF-1 domain (RF-1)	RF-1 domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	23S rRNA	-	-	-
B [auth C]	50S ribosomal protein L2	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome transferase activity RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of DNA-templated DNA replication initiation negative regulation of biological process negative regulation of DNA-templated DNA replication initiation regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of DNA-templated DNA replication negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process DNA-templated DNA replication regulation of biological process negative regulation of DNA replication DNA replication initiation negative regulation of metabolic process biological regulation DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process organic cyclic compound metabolic process DNA replication regulation of DNA-templated DNA replication negative regulation of DNA metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	protein-containing complex intracellular anatomical structure protein-DNA complex chromosome cellular anatomical entity replication inhibiting complex intracellular organelle organelle DnaA-L2 complex intracellular non-membrane-bounded organelle replication fork replisome non-membrane-bounded organelle cytoplasm protein-containing complex intracellular anatomical structure protein-DNA complex chromosome cellular anatomical entity replication inhibiting complex intracellular organelle organelle DnaA-L2 complex intracellular non-membrane-bounded organelle replication fork replisome non-membrane-bounded organelle cytoplasm cytosol ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome large ribosomal subunit
C [auth D]	50S ribosomal protein L3	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
D [auth N]	50S ribosomal protein L16	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
E [auth X]	50S ribosomal protein L27	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding tRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly cellular process cellular component organization or biogenesis ribosome assembly organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process regulation of biological process regulation of cellular process positive regulation of cellular component biogenesis biological regulation positive regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis positive regulation of ribosome biogenesis positive regulation of cellular process cytosolic ribosome assembly regulation of growth regulation of cellular component organization growth regulation of cell growth cell growth	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
F [auth x]	P-site tRNA fMet	-	-	-
G [auth v]	Peptide chain release factor RF2	translation release factor activity, codon specific translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding translation release factor activity nucleic acid binding translation termination factor activity translation factor activity, RNA binding	cellular component disassembly organonitrogen compound metabolic process protein-containing complex organization cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process protein-containing complex disassembly primary metabolic process translation gene expression macromolecule biosynthetic process cellular component organization organic substance metabolic process biosynthetic process organic substance biosynthetic process cellular component disassembly organonitrogen compound metabolic process protein-containing complex organization cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process protein-containing complex disassembly primary metabolic process translation gene expression macromolecule biosynthetic process cellular component organization organic substance metabolic process biosynthetic process organic substance biosynthetic process cellular process metabolic process translational termination cellular component organization or biogenesis protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
B [auth C]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
B [auth C]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
B [auth C]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
B [auth C]	IPR005880	Large ribosomal subunit protein uL2, bacterial/organellar-type	Family
B [auth C]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
B [auth C]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
B [auth C]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
B [auth C]	IPR002171	Large ribosomal subunit protein uL2	Family
C [auth D]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
C [auth D]	IPR019927	Large ribosomal subunit protein uL3, bacterial/organelle-type	Family
C [auth D]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
C [auth D]	IPR000597	Large ribosomal subunit protein uL3	Family
D [auth N]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
D [auth N]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
D [auth N]	IPR000114	Large ribosomal subunit protein uL16, bacterial-type	Family
D [auth N]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
D [auth N]	IPR047873	Large ribosomal subunit protein uL16	Family
E [auth X]	IPR001684	Large ribosomal subunit protein bL27	Family
E [auth X]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
G [auth v]	IPR004374	Peptide chain release factor 2	Family
G [auth v]	IPR000352	Peptide chain release factor class I	Domain
G [auth v]	IPR045853	Peptide chain release factor class I superfamily	Homologous Superfamily
G [auth v]	IPR005139	Peptide chain release factor	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	1MG	Parent Component: G
A	2MA	Parent Component: A
A	2MG	Parent Component: G
A	3TD	Parent Component: U
A	5MC	Parent Component: C
A	5MU	Parent Component: U
A	6MZ	Parent Component: A
A	G7M	Parent Component: G
A	OMC	Parent Component: C
A	OMG	Parent Component: G
A	OMU	Parent Component: U
A	PSU	Parent Component: U
G [auth v]	MEQ	Parent Component: GLN RESID: AA0071 PSI-MOD : N5-methyl-L-glutamine MOD:00080