6C14 | pdb_00006c14

CryoEM structure of mouse PCDH15-1EC-LHFPL5 complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCel124_Ce6c14B1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Cel124_CECOD (v294.1)
DAnoctamine6c14D1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
AFN-plug_TEN1-4e6c14A01 A: a/b three-layered sandwichesX: Rossmann-likeH: P-loop domains-relatedT: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: FN-plug_TEN1-4ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF10242Lipoma HMGIC fusion partner-like protein (L_HMGIC_fpl)Lipoma HMGIC fusion partner-like protein- Family
A, C
PF00028Cadherin domain (Cadherin)Cadherin domainDomain
A, C
PF23206PCDH15-like domain (PCDH15_12th)PCDH15-like domainThis domain is found in human Protocadherin-15 (PCDH15), a calcium-dependent cell-adhesion protein that is essential for maintenance of normal retinal and cochlear function. This domain is predicted to adopt an alpha-beta configuration. It is found C ...This domain is found in human Protocadherin-15 (PCDH15), a calcium-dependent cell-adhesion protein that is essential for maintenance of normal retinal and cochlear function. This domain is predicted to adopt an alpha-beta configuration. It is found C-terminal to several copies of Pfam:PF00028.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
LHFPL tetraspan subfamily member 5 protein-
A, C
Protocadherin-15

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage