6C14 | pdb_00006c14

CryoEM structure of mouse PCDH15-1EC-LHFPL5 complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DUNK_F_TYPEe6c14D1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: UNK_F_TYPEECOD (1.6)
BUNK_F_TYPEe6c14B1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: UNK_F_TYPEECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF10242Lipoma HMGIC fusion partner-like protein (L_HMGIC_fpl)Lipoma HMGIC fusion partner-like protein- Family
A, C
PF00028Cadherin domain (Cadherin)Cadherin domainDomain
A, C
PF23206PCDH15-like domain (PCDH15_12th)PCDH15-like domainThis domain is found in human Protocadherin-15 (PCDH15), a calcium-dependent cell-adhesion protein that is essential for maintenance of normal retinal and cochlear function. This domain is predicted to adopt an alpha-beta configuration. It is found C ...This domain is found in human Protocadherin-15 (PCDH15), a calcium-dependent cell-adhesion protein that is essential for maintenance of normal retinal and cochlear function. This domain is predicted to adopt an alpha-beta configuration. It is found C-terminal to several copies of Pfam:PF00028.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
LHFPL tetraspan subfamily member 5 protein-
A, C
Protocadherin-15

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage