6BUG | pdb_00006bug

Crystal structure of a membrane protein, crystal form I

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ACP-like	8099694	3001805	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	ACP-like	8099694	3001805	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ACP-like	8099694	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	e6bugA1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: Glycos_transf_2,Glyco_transf_7C	F:	ECOD (20:10:01)
C [auth B]	e6bugB1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: Cadherin	F:	ECOD (20:10:01)
E	e6bugE1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: Cadherin	F:	ECOD (20:10:01)
B [auth C]	e6bugC1	A: central core domain of D-alanyl transfer protein	X: central core domain of D-alanyl transfer protein	H: central core domain of D-alanyl transfer protein	T:	F:	ECOD (20:10:01)
B [auth C]	e6bugC3	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)
F	e6bugF1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)
G	e6bugG1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)
D	e6bugD1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
C [auth B]	1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
E	1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain
B [auth C], D, F, G	PF03062	MBOAT, membrane-bound O-acyltransferase family (MBOAT)	MBOAT, membrane-bound O-acyltransferase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E	D-alanyl carrier protein	phosphopantetheine-dependent carrier activity D-alanyl carrier activity molecular carrier activity	cellular component organization cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization carbohydrate derivative biosynthetic process teichoic acid biosynthetic process peptidoglycan-based cell wall biogenesis small molecule biosynthetic process carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process macromolecule biosynthetic process cellular component organization cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization carbohydrate derivative biosynthetic process teichoic acid biosynthetic process peptidoglycan-based cell wall biogenesis small molecule biosynthetic process carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process lipoteichoic acid biosynthetic process metabolic process small molecule metabolic process macromolecule metabolic process teichoic acid metabolic process cell wall macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
B [auth C], D, F, G	D-alanyl transfer protein DltB	acyltransferase activity transferase activity catalytic activity	carbohydrate derivative biosynthetic process teichoic acid biosynthetic process peptidoglycan-based cell wall biogenesis small molecule biosynthetic process cell wall organization or biogenesis carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process lipoteichoic acid biosynthetic process carbohydrate derivative biosynthetic process teichoic acid biosynthetic process peptidoglycan-based cell wall biogenesis small molecule biosynthetic process cell wall organization or biogenesis carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process lipoteichoic acid biosynthetic process cellular process metabolic process small molecule metabolic process cellular component organization or biogenesis macromolecule metabolic process teichoic acid metabolic process cell wall macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, C [auth B], E	IPR036736	ACP-like superfamily	Homologous Superfamily
A, C [auth B], E	IPR003230	D-alanyl carrier protein	Family
B [auth C], D, F, G	IPR051085	Membrane-bound O-acyltransferase	Family
B [auth C], D, F, G	IPR004299	Membrane bound O-acyl transferase, MBOAT	Family
B [auth C], D, F, G	IPR024194	Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB	Family
B [auth C], D, F, G	IPR024024	D-alanyl transfer protein DltB	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
B [auth C], D, F, G	OPM	Transmembrane	Alpha-helical polytopic	Membrane-bound O-acyltransferase	Membrane-bound O-acyltransferase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
B [auth C], D, F, G	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
B [auth C], D, F, G	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
B [auth C], D, F, G	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	O-acyltransferases	DltB O-acyltransferase, crystal form I

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C [auth B], E	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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