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Crystal structure of a membrane protein, crystal form I


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilyACP-like 8099694 3001805 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyACP-like 8099694 3001805 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyACP-like 8099694 3001805 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GMgpCe6bugG1 A: alpha arraysX: P-loop domains-likeH: beta-propellerT: 7-bladedF: MgpCECOD (v295.2)
FMgpCe6bugF1 A: alpha arraysX: P-loop domains-likeH: beta-propellerT: 7-bladedF: MgpCECOD (v295.2)
DMgpCe6bugD1 A: alpha arraysX: P-loop domains-likeH: beta-propellerT: 7-bladedF: MgpCECOD (v295.2)
B [auth C]e6bugC1 A: alpha arraysX: helical ridge domain of D-alanyl transfer proteinH: helical ridge domain of D-alanyl transfer proteinT: helical ridge domain of D-alanyl transfer proteinF:ECOD (v295.2)
B [auth C]e6bugC2 A: alpha arraysX: central core domain of D-alanyl transfer proteinH: central core domain of D-alanyl transfer proteinT: central core domain of D-alanyl transfer proteinF:ECOD (v295.2)
B [auth C]e6bugC3 A: alpha arraysX: P-loop domains-likeH: beta-propellerT: 7-bladedF:ECOD (v295.2)
ECadherine6bugE1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: CadherinECOD (v295.2)
C [auth B]Cadherine6bugB1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: CadherinECOD (v295.2)
APP-bindinge6bugA1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: PP-bindingECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth C],
D,
F,
G
PF03062MBOAT, membrane-bound O-acyltransferase family (MBOAT)MBOAT, membrane-bound O-acyltransferase family- Family
A,
C [auth B],
E
PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth C],
D,
F,
G
D-alanyl transfer protein DltB
A,
C [auth B],
E
D-alanyl carrier protein

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A,
C [auth B],
E
SEP Parent Component: SER

:  AA0037

:  O-phospho-L-serine MOD:00046