6B9Q | pdb_00006b9q

Single particle cryo-EM structure determination of the LuIII capsid protein


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth t]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
YA [auth s]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
XA [auth r]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
WA [auth q]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
VA [auth p]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
UA [auth o]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
PA [auth j]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
OA [auth i]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
NA [auth h]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
JA [auth d]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
HA [auth b]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
GA [auth a]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
FB [auth z]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
EB [auth y]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
EA [auth 5]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
DB [auth x]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
CB [auth w]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
BB [auth v]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
AB [auth u]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
AA [auth 1]SCOP2 FamilyParvovirinae-like VP 8073278 4003479 SCOP2 (2022-06-29)
AA [auth 1]SCOP2 SuperfamilyssDNA viruses 8073279 3000931 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth t]Methyltransf_25e6b9qt1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
ZMethyltransf_25e6b9qZ1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
YA [auth s]Methyltransf_25e6b9qs1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
YMethyltransf_25e6b9qY1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
XA [auth r]Methyltransf_25e6b9qr1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
XMethyltransf_25e6b9qX1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
WA [auth q]Methyltransf_25e6b9qq1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
WMethyltransf_25e6b9qW1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
VA [auth p]Methyltransf_25e6b9qp1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
VMethyltransf_25e6b9qV1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
UA [auth o]Methyltransf_25e6b9qo1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
UMethyltransf_25e6b9qU1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
TA [auth n]Methyltransf_25e6b9qn1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
TMethyltransf_25e6b9qT1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
SA [auth m]Methyltransf_25e6b9qm1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
SMethyltransf_25e6b9qS1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
RA [auth l]Methyltransf_25e6b9ql1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
RMethyltransf_25e6b9qR1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
QA [auth k]Methyltransf_25e6b9qk1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
QMethyltransf_25e6b9qQ1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
PA [auth j]Methyltransf_25e6b9qj1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
PMethyltransf_25e6b9qP1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
OA [auth i]Methyltransf_25e6b9qi1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
OMethyltransf_25e6b9qO1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
NA [auth h]Methyltransf_25e6b9qh1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
NMethyltransf_25e6b9qN1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
MA [auth g]Methyltransf_25e6b9qg1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
MMethyltransf_25e6b9qM1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
LA [auth f]Methyltransf_25e6b9qf1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
LMethyltransf_25e6b9qL1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
KA [auth e]Methyltransf_25e6b9qe1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
KMethyltransf_25e6b9qK1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
JA [auth d]Methyltransf_25e6b9qd1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
JMethyltransf_25e6b9qJ1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
IA [auth c]Methyltransf_25e6b9qc1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
IMethyltransf_25e6b9qI1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
HB [auth 8]Methyltransf_25e6b9q81 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
HA [auth b]Methyltransf_25e6b9qb1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
HMethyltransf_25e6b9qH1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
GB [auth 7]Methyltransf_25e6b9q71 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
GA [auth a]Methyltransf_25e6b9qa1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
GMethyltransf_25e6b9qG1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
FB [auth z]Methyltransf_25e6b9qz1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
FA [auth 6]Methyltransf_25e6b9q61 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
FMethyltransf_25e6b9qF1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
EB [auth y]Methyltransf_25e6b9qy1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
EA [auth 5]Methyltransf_25e6b9q51 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
EMethyltransf_25e6b9qE1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
DB [auth x]Methyltransf_25e6b9qx1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
DA [auth 4]Methyltransf_25e6b9q41 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
DMethyltransf_25e6b9qD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
CB [auth w]Methyltransf_25e6b9qw1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
CA [auth 3]Methyltransf_25e6b9q31 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
CMethyltransf_25e6b9qC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
BB [auth v]Methyltransf_25e6b9qv1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
BA [auth 2]Methyltransf_25e6b9q21 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
BMH1e6b9qB1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: MH1ECOD (v294.1)
AB [auth u]Methyltransf_25e6b9qu1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
AA [auth 1]Methyltransf_25e6b9q11 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Methyltransf_25ECOD (v294.1)
ARRM_1e6b9qA1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: RRM_1ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily