6B9Q | pdb_00006b9q

Single particle cryo-EM structure determination of the LuIII capsid protein


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth t]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
YA [auth s]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
XA [auth r]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
WA [auth q]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
VA [auth p]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
UA [auth o]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
PA [auth j]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
OA [auth i]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
NA [auth h]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
JA [auth d]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
HA [auth b]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
GA [auth a]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
FB [auth z]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
EB [auth y]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
EA [auth 5]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
DB [auth x]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
CB [auth w]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
BB [auth v]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
AB [auth u]SCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)
AA [auth 1]SCOP2 FamilyParvovirinae-like VP 8073278 4003479 SCOP2 (2022-06-29)
AA [auth 1]SCOP2 SuperfamilyssDNA viruses 8073279 3000931 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8073279 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth t]PriXe6b9qt1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
ZPriXe6b9qZ1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
YA [auth s]PriXe6b9qs1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
YPriXe6b9qY1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
XA [auth r]PriXe6b9qr1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
XPriXe6b9qX1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
WA [auth q]PriXe6b9qq1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
WPriXe6b9qW1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
VA [auth p]PriXe6b9qp1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
VPriXe6b9qV1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
UA [auth o]PriXe6b9qo1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
UPriXe6b9qU1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
TA [auth n]PriXe6b9qn1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
TPriXe6b9qT1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
SA [auth m]PriXe6b9qm1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
SPriXe6b9qS1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
RA [auth l]PriXe6b9ql1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
RPriXe6b9qR1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
QA [auth k]PriXe6b9qk1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
QPriXe6b9qQ1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
PA [auth j]PriXe6b9qj1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
PPriXe6b9qP1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
OA [auth i]PriXe6b9qi1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
OPriXe6b9qO1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
NA [auth h]PriXe6b9qh1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
NPriXe6b9qN1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
MA [auth g]PriXe6b9qg1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
MPriXe6b9qM1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
LA [auth f]PriXe6b9qf1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
LPriXe6b9qL1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
KA [auth e]PriXe6b9qe1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
KPriXe6b9qK1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
JA [auth d]PriXe6b9qd1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
JPriXe6b9qJ1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
IA [auth c]PriXe6b9qc1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
IPriXe6b9qI1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
HB [auth 8]PriXe6b9q81 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
HA [auth b]PriXe6b9qb1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
HPriXe6b9qH1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
GB [auth 7]PriXe6b9q71 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
GA [auth a]PriXe6b9qa1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
GPriXe6b9qG1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
FB [auth z]PriXe6b9qz1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
FA [auth 6]PriXe6b9q61 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
FPriXe6b9qF1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
EB [auth y]PriXe6b9qy1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
EA [auth 5]PriXe6b9q51 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
EPriXe6b9qE1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
DB [auth x]PriXe6b9qx1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
DA [auth 4]PriXe6b9q41 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
DPriXe6b9qD1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
CB [auth w]PriXe6b9qw1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
CA [auth 3]PriXe6b9q31 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
CPriXe6b9qC1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
BB [auth v]PriXe6b9qv1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
BA [auth 2]PriXe6b9q21 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
BPBS_linker_polye6b9qB1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: Undecaprenyl diphosphate synthaseF: PBS_linker_polyECOD (v295.2)
AB [auth u]PriXe6b9qu1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
AA [auth 1]PriXe6b9q11 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
ARRM_1e6b9qA1 A: alpha arraysX: SH3H: SH3T: SH3F: RRM_1ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily